CX047028

Overview
NameCX047028
Unique NameCX047028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.323e-18
Identity = 68/260 (26.15%), Postives = 119/260 (45.77%), Query Frame = 3
Query:   81 PIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASK-GLEAVQSEVN-DLDWESTFFLRHLP----VSNMAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIK----GLRAHTDAGGIILLFQDDEVSGLQL-LKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNP 827
            P++DL+  +         +I +AC ++GFF+LVNHG+  EL+  ++      + K   ++ +       G  + +   N D+ W     L   P      ++    +    +R  ++ +   ++ +                          +      ++++YPPCP+   +     G   HTD   II + + +  SGLQ+ L D  WV VPP + S  IN+GD L+V+TNG++KSV HRV+A T  +R+S+  F  P
Sbjct:   28 PVVDLTHPDAKN------LIVNACRDFGFFKLVNHGVPLELMANLENEALRFFKKSQSEKDRAGPPDPFGYGSKRIGPNGDVGWVEYLLLNTNPDVISPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPPCPEVQALNRNLVGFGEHTDPQ-IISVLRSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADTTKSRLSMIYFGGP 280          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.402e-18
Identity = 69/261 (26.44%), Postives = 122/261 (46.74%), Query Frame = 3
Query:   66 TMENFPIIDLSKLNGDE--RSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDL------DWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQ-TEGNRMSIASFY 821
            T+   P IDL  +      R + +  + DA E +GFF+ +NHG+  ++++ +    +  + +  + R       K  +       DL       W  T      P  ++ +  DL +   + M E++ E+ K+A                  K++   +KG         +PPCP+P+   G   HTD   + +L  D+   GLQ+L D  W+DVPP   +++ N+GD L++I+N K+ S+ HR++A   E  R+S+A F+
Sbjct:   51 TVVMIPTIDLGGVFESTVVRESVVAKVKDAMEKFGFFQAINHGVPLDVMEKMINGIRRFHDQDPEVRKMFYTRDKTKKLKYHSNADLYESPAASWRDTLSCVMAP--DVPKAQDLPEVCGEIMLEYSKEVMKLAELMFEILSEALGLSPNHLKEMDC-AKG--LWMLCHCFPPCPEPNRTFGGAQHTDRSFLTILLNDNN-GGLQVLYDGYWIDVPPNPEALIFNVGDFLQLISNDKFVSMEHRILANGGEEPRISVACFF 305          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 73/277 (26.35%), Postives = 116/277 (41.88%), Query Frame = 3
Query:   69 MENFPIIDLSKLNGDERSATM---------EMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQM-----VASKGLEAVQSEVNDLDWES--TFFLRHLPVSNMAEIPDLEDDYRK---AMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSN---YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKD--DQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNP 827
            + + P++D S   G+  +  +         E +  A ++WG F LV HG+  +LL  V+      +     ++ + +         G   + S  +   W    TF   +L        P    DYR     M+EF  E+  +A                    V    K     T   +   YP CP P    GL AHTD+G    + Q   V GLQL +   D+WV VP +  ++V+N+GD  +++TNG++ SV HR +   E +R+S+  F  P
Sbjct:   31 LHDHPVVDGSGAGGEPDAVPVVDMRDPFAAEAVGLAAQDWGAFLLVGHGVPLDLLVRVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESDRISLGYFLGP 306          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 71/268 (26.49%), Postives = 123/268 (45.90%), Query Frame = 3
Query:   63 ITMENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASK-----GLEAVQSEVNDLDWESTFFLRHLPV----SNMAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKP--DLIK-GLRAHTDAGGIILLFQDDEVSGLQL-LKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNP 827
            +T  + P+++L+      R      I  ACE +GFF++VNHG+  EL+  +++     +G  + Q  K           G + +     D+ W     L   P        A        +R++++E+  E+++V+                         +      ++++YP   +    ++K G   HTD   II + + +  +GLQ+ +KD  WV VPP   S  IN+GD L+V+TNG++KSV HRV+A T  +R+S+  F  P
Sbjct:   26 LTSHSIPVVNLADPEAKTR------IVKACEEFGFFKVVNHGVRPELMTRLEQEAIGFFG--LPQSLKNRAGPPEPYGYGNKRIGPN-GDVGWIEYLLLNANPQLSSPKTSAVFRQTPQIFRESVEEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRDEKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQ-IISVLRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTRRSRISMIYFGGP 283          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.798e-17
Identity = 69/281 (24.56%), Postives = 118/281 (41.99%), Query Frame = 3
Query:   66 TMENFPIIDLSKL-----NGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQR--FKQMVASKGLEAVQSEV-----NDLDWESTFFLRHLP--VSNMAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXX--KKVFYGSKGPTFGT-------KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDA 839
            T    P++D+S          +R   +E +  A  +WG   +  HGI  EL+D ++      +   +  +  +    A+  L+   S +        +WE   F    P  +++ A  P    DY  A ++F      +A                    +K    +   T          K++ YP CP+P+L  G+ AHTD   +  +  +  V GLQ+L   +WV       +I++++GD LE+++NG+Y SVLHR +   E  R+S   F  P  D+
Sbjct:   54 TAPRIPVVDISPFLDSSSQQQQRDECVEAVRAAAADWGVMHIAGHGIPAELMDRLRAAGTAFFALPVQDKEAYANDPAAGRLQGYGSRLATNTCGQREWEDYLFHLVHPDGLADHALWPAYPPDYIAATRDFGRRTRDLASTLLAILSMGLLGTDRGDALEKALTTTTTRTAADDDLLLQLKINYYPRCPQPELAVGVEAHTDVSALSFILHNG-VPGLQVLHGARWVTARHEPGTIIVHVGDALEILSNGRYTSVLHRGLVNREAVRISWVVFCEPPPDS 333          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.396e-16
Identity = 72/277 (25.99%), Postives = 114/277 (41.16%), Query Frame = 3
Query:   69 MENFPIIDLSKLNGDERSATMEMINDAC---------ENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQM-----VASKGLEAVQSEVNDLDWES--TFFLRHLPVSNMAEIPDLEDDYRK---AMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSN---YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKD--DQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNP 827
            + + P++D S   G   +  +  + D C         ++WG F L  HG+  ELL  V+      +     ++ + +         G   + S  +   W    TF   +L        P    DYR     M+EF  E+  +A                    V    K     T   +   YP CP P    GL AHTD+G    + Q   V GLQL +   D+WV VP +  ++V+N+GD  +++TNG++ SV HR +   + +R+S+  F  P
Sbjct:   31 LHDHPVVDGSGAGGGPDAVPVVDMRDPCAAEAVALAAQDWGAFLLEGHGVPLELLARVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGP 306          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.110e-16
Identity = 72/277 (25.99%), Postives = 114/277 (41.16%), Query Frame = 3
Query:   69 MENFPIIDLSKLNGDERSATMEMINDAC---------ENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQM-----VASKGLEAVQSEVNDLDWES--TFFLRHLPVSNMAEIPDLEDDYRK---AMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSN---YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKD--DQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNP 827
            + + P++D S   G   +  +  + D C         ++WG F L  HG+  ELL  V+      +     ++ + +         G   + S  +   W    TF   +L        P    DYR     M+EF  E+  +A                    V    K     T   +   YP CP P    GL AHTD+G    + Q   V GLQL +   D+WV VP +  ++V+N+GD  +++TNG++ SV HR +   + +R+S+  F  P
Sbjct:   31 LHDHPVVDGSGAGGGPDAVPVVDMRDPCAAEAVALAAQDWGAFLLEGHGVPLELLAGVEAAIGGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGP 306          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 4.062e-16
Identity = 71/262 (27.10%), Postives = 113/262 (43.13%), Query Frame = 3
Query:   75 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHY--------GKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLR-HLPVSN-MAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGS-KGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNP 827
            + PIIDLS    + R + +E    A +  GFF++VNHG+S +++  ++ + ++ +            ++R K      G  A      +  W     L    PV + + E PD     R  +++F  +   V                      F G   G      +++YP CP PD   G   H D   I LL     V+GL++     W+ V P  ++ V+N G QLEV+TNG  KS+ HR +  +   R S+A+F  P
Sbjct:   34 SLPIIDLSCGRDEVRRSILE----AGKELGFFQVVNHGVSKQVMRDMEGMCEQFFHLPAADKASLYSEERHKPNRLFSG--ATYDTGGEKYWRDCLRLACPFPVDDSINEWPDTPKGLRDVIEKFTSQTRDVGKELLRLLCEGMGIQADY----FEGDLSGGNVILNINHYPSCPNPDKALGQPPHCDRNLITLLLPG-AVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNSALARTSVATFIMP 284          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.928e-16
Identity = 72/268 (26.87%), Postives = 111/268 (41.42%), Query Frame = 3
Query:   75 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTF-------------FLRHLPVSNMAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGS-KGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSD 836
            + PIID+S+   + R A +    D+ + +GF ++VNHGIS  +L  +  +  E +    + +      ++     +SE N L   S F              L  LP  +  + P      R+ +  +      +A                     F G   G      ++ YPP P P    GL  H D   + +L     V GL++     W+ V P+ +S+VIN G QLEV+TNG  K+V HR        R+S+ASF  P  D
Sbjct:   34 SLPIIDMSRGRDEVRQAIL----DSGKEYGFIQVVNHGISEPMLHEMYAVCHEFFDMPAEDK------AEFFSEDRSERNKLFCGSAFETLGEKYWIDVLELLYPLPSGDTKDWPHKPQMLREVVGNYT----SLARGVAMEILRLLCEGLGLRPDFFVGDISGGRVVVDINYYPPSPNPSRTLGLPPHCDRDLMTVLLPG-AVPGLEIAYKGGWIKVQPVPNSLVINFGLQLEVVTNGYLKAVEHRAATNFAEPRLSVASFIVPADD 286          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.928e-16
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  552 YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSD 836
            YPPCP+P+   G   H D   + +L QDD V GL++L D +W  V P+  ++VIN+GD    ++NG+YKS LHR +      R S+A F  P  D
Sbjct:  234 YPPCPEPERTLGTGPHCDPTALTILLQDD-VGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPRED 327          
The following BLAST results are available for this feature:
BLAST of CX047028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
G2OX_PHACN3.323e-1826.15Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
GSL_ARATH7.402e-1826.44Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
G3O23_WHEAT3.674e-1726.35Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
G2OX2_ARATH3.674e-1726.49Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
LDOX_MAIZE4.798e-1724.56Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
G3O22_WHEAT1.396e-1625.99Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT3.110e-1625.99Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
IDS3_HORVU4.062e-1627.102'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
IDS2_HORVU6.928e-1626.87Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
GAOX2_ORYSJ6.928e-1642.11Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F12-L24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047028 ID=CX047028; Name=CX047028; organism=Citrus sinensis; type=EST; length=841bp
CTAGAGTTTTTTAAGTGATCATAGAGTAAGAAGGGAGATTGTGGGAGTTA
AGAAACAAACAAATAACAATGGAGAATTTTCCAATTATTGACTTGTCAAA
GCTCAATGGTGATGAGAGAAGTGCTACCATGGAAATGATCAATGATGCCT
GTGAGAACTGGGGTTTCTTTGAGTTGGTGAATCATGGGATATCACATGAG
CTGCTGGACACTGTTCAGAGGTTGACAAAGGAGCATTACGGGAAGTGTAT
GGACCAAAGATTCAAGCAAATGGTGGCAAGCAAGGGCCTTGAAGCTGTTC
AGTCCGAAGTTAATGATTTGGACTGGGAAAGCACTTTCTTCTTGCGCCAC
CTTCCTGTTTCAAACATGGCTGAAATCCCCGATCTTGAAGATGATTACAG
GAAGGCAATGAAGGAATTTGCCGTTGAATTGGAGAAGGTTGCTGAGCAAC
TTCTGGAATTGTTGTGTGAGAATCTTGGGCTGGAGGAAGGGTATTTGAAG
AAAGTGTTTTATGGGTCCAAAGGACCAACCTTTGGCACCAAGGTCAGCAA
TTACCCTCCATGCCCAAAACCAGATCTGATCAAGGGACTTAGGGCCCATA
CTGATGCTGGTGGCATCATCTTGCTCTTTCAAGATGACGAAGTCAGTGGC
CTCCAGCTGCTCAAAGATGACCAATGGGTTGATGTTCCACCCATGAAACA
CTCCATTGTCATCAACCTCGGTGACCAACTTGAGGTGATAACCAATGGCA
AGTACAAGAGTGTGCTACATCGCGTGATTGCTCAAACAGAGGGTAACAGG
ATGTCCATAGCATCATTTTACAATCCAGGCAGTGATGCTGT
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