CX047028

Overview
NameCX047028
Unique NameCX047028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.928e-16
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  552 YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSD 836
            YPPCP+P+   G   H D   + +L QDD V GL++L D +W  V P+  ++VIN+GD    ++NG+YKS LHR +      R S+A F  P  D
Sbjct:  234 YPPCPEPERTLGTGPHCDPTALTILLQDD-VGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPRED 327          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.439e-15
Identity = 73/288 (25.35%), Postives = 123/288 (42.71%), Query Frame = 3
Query:   48 LRNKQITMENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASK-GLEAVQSEVNDLDWESTFFLRHLPVSNMAE------------IPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPK-------PDLIK-------GLRAHTDAGGIILLFQDDEVSGLQL-LKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNP 827
            +R K+      P IDLS     ERS   E++  ACE +GFF++VNH +  E++  +     E + K   ++ +   ++  G        N    E  + L H    +++E               + +DY KA+K+   E+ ++A                   K+       +   ++++YPP  K       P  I+       G   H+D   I+ + + + V GLQ+      W+ VPP      + +GD L+V+TNG++ SV HRV+  T   RMS+  F  P
Sbjct:   10 IRTKKTKAVGIPTIDLSL----ERSQLSELVVKACEEYGFFKVVNHSVPKEVISRLDEEGIEFFSKNSSEKRQAGTSTPFGYGCKNIGPNGDKGELEYLLLHSNPISISERSKTIAKDHPIKFSCIVNDYIKAVKDLTCEILELAAEGLWVPDKSSL------SKIIKDEHSDSL-LRINHYPPVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQ-ILTILRSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNTTKPRMSMMYFAAP 285          
The following BLAST results are available for this feature:
BLAST of CX047028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
GAOX2_ORYSI6.928e-1642.11Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
G2OX2_PEA3.439e-1525.35Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F12-L24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047028 ID=CX047028; Name=CX047028; organism=Citrus sinensis; type=EST; length=841bp
CTAGAGTTTTTTAAGTGATCATAGAGTAAGAAGGGAGATTGTGGGAGTTA
AGAAACAAACAAATAACAATGGAGAATTTTCCAATTATTGACTTGTCAAA
GCTCAATGGTGATGAGAGAAGTGCTACCATGGAAATGATCAATGATGCCT
GTGAGAACTGGGGTTTCTTTGAGTTGGTGAATCATGGGATATCACATGAG
CTGCTGGACACTGTTCAGAGGTTGACAAAGGAGCATTACGGGAAGTGTAT
GGACCAAAGATTCAAGCAAATGGTGGCAAGCAAGGGCCTTGAAGCTGTTC
AGTCCGAAGTTAATGATTTGGACTGGGAAAGCACTTTCTTCTTGCGCCAC
CTTCCTGTTTCAAACATGGCTGAAATCCCCGATCTTGAAGATGATTACAG
GAAGGCAATGAAGGAATTTGCCGTTGAATTGGAGAAGGTTGCTGAGCAAC
TTCTGGAATTGTTGTGTGAGAATCTTGGGCTGGAGGAAGGGTATTTGAAG
AAAGTGTTTTATGGGTCCAAAGGACCAACCTTTGGCACCAAGGTCAGCAA
TTACCCTCCATGCCCAAAACCAGATCTGATCAAGGGACTTAGGGCCCATA
CTGATGCTGGTGGCATCATCTTGCTCTTTCAAGATGACGAAGTCAGTGGC
CTCCAGCTGCTCAAAGATGACCAATGGGTTGATGTTCCACCCATGAAACA
CTCCATTGTCATCAACCTCGGTGACCAACTTGAGGTGATAACCAATGGCA
AGTACAAGAGTGTGCTACATCGCGTGATTGCTCAAACAGAGGGTAACAGG
ATGTCCATAGCATCATTTTACAATCCAGGCAGTGATGCTGT
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