CX047026

Overview
NameCX047026
Unique NameCX047026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2122 contig Csv1_Contig2122:28..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.574e-31
Identity = 86/242 (35.54%), Postives = 132/242 (54.55%), Query Frame = 1
Query:   91 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLP 801
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD +VR D  +P G MDVVSIP+T E++R+L +  G+  LH I ++EA  K  ++R+ +  +     +N +DG     +I   D     + T+ + +   +I E + F+ G  V VT G+N  R G I++ +    G  + + I+D  G  F T     F +G   KP +SLP
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYF-TSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPKISLP 243          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_METS3 (30S ribosomal protein S4e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4e PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.097e-31
Identity = 82/236 (34.75%), Postives = 125/236 (52.97%), Query Frame = 1
Query:   94 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF-ETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 798
            G +KHLK   APK W +      +  KPS+G H     L L L++R+ LK A   RE   I+   +VLVD +V  D  +P GFMD++ IPKT E +R+L D KGR +L+ I  EE   KLCK+ +    + G   +N +DG+ +   +      D I L +  ++I E  +   G  V++TGG++ G +G +     ++ S   TI I+++   EF T     F +G+   P +SL
Sbjct:    5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTVSEIIVNESSNPNTIIIENSAKDEFLTLKDYAFVVGEDA-PAISL 237          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.963e-31
Identity = 77/244 (31.56%), Postives = 130/244 (53.28%), Query Frame = 1
Query:   91 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 798
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L    +   ++F+ G +  +TGG++ G    +   EK     + + +++  G +F T    VF +G+  +P +S+
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.963e-31
Identity = 77/244 (31.56%), Postives = 130/244 (53.28%), Query Frame = 1
Query:   91 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 798
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L    +   ++F+ G +  +TGG++ G    +   EK     + + +++  G +F T    VF +G+  +P +S+
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.774e-30
Identity = 79/244 (32.38%), Postives = 130/244 (53.28%), Query Frame = 1
Query:   91 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 798
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++A  KLCK+ +    + G   +N +DGR          +  + + K  D++ + +    I   + F  G +  VTGG++ G    I   E      + + +++  G +F T    VF +G+  +P +S+
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKADAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.161e-30
Identity = 78/244 (31.97%), Postives = 129/244 (52.87%), Query Frame = 1
Query:   91 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 798
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + + K  D++ + +    I   + F  G +  VTGG++ G    I   E      + + +++  G +F T    VF +G+  +P +S+
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.741e-30
Identity = 77/244 (31.56%), Postives = 129/244 (52.87%), Query Frame = 1
Query:   91 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 798
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + + K  D++ + +    I   + F  G +  +TGG++ G    I   E      + + +++  G +F T    VF +G+  +P +S+
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.961e-29
Identity = 82/253 (32.41%), Postives = 136/253 (53.75%), Query Frame = 1
Query:   94 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDL------ETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFE-TIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPK 804
            G K+H+KRL AP  W +  K GG FAP+P  GPH     +PL++++R+ L YA   RE   I+ +  + VD  VR +  +P G MDVV IP+T + +R++ +   R  +  I +EEA+ K+C++++  + + G   I  +DG+   +   DP      +    D++ L+L      E+ K+ + I F+ G  V    GR+ G VG +   +  +G  E  I +++  G +F T  G +  IGK  +P V++ K
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEGPQEDLITVENPEGDQFQTTKGRLIAIGK-DEPLVTVRK 258          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.961e-29
Identity = 78/236 (33.05%), Postives = 131/236 (55.51%), Query Frame = 1
Query:   97 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGK--GTKPWVSL 798
            ++ H KRL+APK + + +    +  KPS GPH ++E +PL++++R+ L+ A T RE   I+    +LVD  VR D  +P G  DVV+IPK  +++R+L+D KGR+    +  E+A  KL K+ +    + G   +N +DG  I   +   K  D+I L +   ++ + +KF+ G +VM+TGG + G +G IK+ +  + S   +   +    +  T    VF +GK    KP + L
Sbjct:    2 IELHQKRLSAPKTYKIPRKVSKWVVKPSPGPH-NKEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSND-YKTKDSILLRIPEKEVVDHLKFEEGALVMITGGTHAGEIGRIKSYKIVRSSAPNLVTVEGEERDITTIEDYVFVVGKKDSDKPVIDL 233          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.346e-29
Identity = 88/254 (34.65%), Postives = 135/254 (53.15%), Query Frame = 1
Query:   85 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKG 807
            MAR  G K+HLKRL AP  W + +    +A KP  GPH   E +PL++++R+ L YA T RE   ++ +  + VD +VR D  +P G MDV+ I   +E +R++ Y  K    +  I  EEAK K+C++ +    + G   +N +DGR   IR  DP         K    + + +   +I +++ F+ G + +V  GRN GRVG I+   K  G  +T + ++D     F T    VF IGK  +P + LP+G
Sbjct:    1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMR-IDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRIEEIVKGMGRKKTLVKMRDVHDEVFYTVAEYVFPIGK-EEPLIKLPEG 252          
The following BLAST results are available for this feature:
BLAST of CX047026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_PYRFU3.574e-3135.5430S ribosomal protein S4e OS=Pyrococcus furiosus G... [more]
RS4E_METS36.097e-3134.7530S ribosomal protein S4e OS=Methanobrevibacter sm... [more]
RS4E_METVS7.963e-3131.5630S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA7.963e-3131.5630S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METM51.774e-3032.3830S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM75.161e-3031.9730S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM66.741e-3031.5630S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METKA1.961e-2932.4130S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_ARCFU1.961e-2933.0530S ribosomal protein S4e OS=Archaeoglobus fulgidu... [more]
RS4E_IGNH43.346e-2934.6530S ribosomal protein S4e OS=Ignicoccus hospitalis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F11-L22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047026 ID=CX047026; Name=CX047026; organism=Citrus sinensis; type=EST; length=865bp
TGTGAGTGCATTTCACTTCGTTTTTGTTTTGCAGGACTGTGACACGCCGT
TGGCGAATCCAAGCTCAGGCTCACGAACACAAAAATGGCGAGAGGTTTGA
AGAAACATTTGAAGAGGCTTAATGCCCCAAAGCACTGGATGCTTGACAAA
CTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAG
GGAGTGTTTGCCCTTAATTCTTATCTTACGTAACCGCTTGAAGTATGCTC
TTACATACCGAGAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTT
GATGCTAAGGTTCGCACAGATAAGACTTACCCTGCTGGGTTCATGGATGT
TGTGTCAATTCCAAAGACGAATGAGAACTTCCGTCTCCTTTACGACACCA
AGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAGGAGGCTAAGTTCAAG
CTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAAGGGAATCCCTTACAT
CAACACTTATGATGGGAGGACTATTCGCTACCCAGACCCACTCATCAAGG
CCAATGATACCATCAAGCTGGACCTGGAGACTAACAAGATCACCGAGTTC
ATCAAGTTTGATGTTGGAAATGTTGTGATGGTGACTGGAGGGAGAAACAG
AGGACGTGTTGGAATCATTAAGAACAGAGAAAAGCATAAGGGTAGCTTTG
AAACTATCCACATCCAGGATGCTCTTGGTCATGAGTTTGCAACTCGTCTT
GGAAATGTGTTCACCATTGGCAAGGGTACAAAGCCATGGGTTTCTCTTCC
CAAGGGCAAGGGTATTAAACTATCCATCATTGAGGAGGNCAGGAAGAGAC
AAGCCCTGGCGACTT
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