CX047026
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 4.369e-29 Identity = 75/244 (30.74%), Postives = 127/244 (52.05%), Query Frame = 1 Query: 91 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 798 +G +KHLKRL AP +W L + F +PS GPH + LPL+L++R+ LKYA RE I+ +L+D R + +PAG MDV+SIP+ +E + +L+D GR L + ++ KLCK+ + + G +N +DGR + + + K D++ + + I + F G + +TGG++ G I E + + +++ G +F T VF +G+ +P +S+ Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLK--KTDKTDVKLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 5.707e-29 Identity = 78/229 (34.06%), Postives = 122/229 (53.28%), Query Frame = 1 Query: 94 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATR--LGNVFTIGK 774 G +HLK L AP ++ + K + KPS GPH E +PL+LI+R+ LK A T RE I+ + +LVD K R D + G MDV+SIP+ N+R++ D RL I E+K KL KV + + G + ++DGR +K D++ ++L + + + ++FD G+ V+VT GR GR+G + +G I ++D E + R N+ +GK Sbjct: 5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIGRV------EGIGTIIEMRDLENPELSYRGVKENLIVVGK 227
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.836e-27 Identity = 77/238 (32.35%), Postives = 121/238 (50.84%), Query Frame = 1 Query: 106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIK 819 HLKR+ AP+ W + + + KP G H +PL+++LR+ LK A E+ IL + VLVD KVR D Y G D +SIP N N+R++ G+F L + D A K+CK+ + + G +N +DG T+ + K D++ L + KI + + VG++VMVT G++ G +G +K + + S + +F T VF IGK + P +G+K Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICKIVNKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKVKEIKVVRSSAPNTVVITTPEGDFETIEQYVFVIGKDS------PAVQGVK 233
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.554e-26 Identity = 78/232 (33.62%), Postives = 116/232 (50.00%), Query Frame = 1 Query: 106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 798 H KRL+ PK W + K G + GPH LPL +I+R+ LK RE IL + VLVD R D +P G DV+++P NE +R+L D KGR LH + + KLC++ + + G +N DG I + D++ L + ++ + +KF+VGN+ MV GG++ G G I++ RE T+ I +F T V IG+ KP + L Sbjct: 3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCRINNKTTVKGGKFQLNLNDGTNIIGSNE-YGTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE-DKPEIRL 229
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.462e-26 Identity = 74/229 (32.31%), Postives = 117/229 (51.09%), Query Frame = 1 Query: 106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI---RYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 774 H+ R AP M+ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR+L D R I +EA++K ++ + ++G +N DGR I + K T+K++L + +I + + + GGRN G GI+KN K + I ++ G+ + T + NV +IG+ Sbjct: 3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFVGGRNVGIHGIVKNINLSKFKSRKYSVITLESRDGNTYQTNIMNVMSIGR 231
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.905e-26 Identity = 72/229 (31.44%), Postives = 115/229 (50.22%), Query Frame = 1 Query: 106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 774 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.905e-26 Identity = 72/229 (31.44%), Postives = 115/229 (50.22%), Query Frame = 1 Query: 106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 774 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.905e-26 Identity = 72/229 (31.44%), Postives = 115/229 (50.22%), Query Frame = 1 Query: 106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 774 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.905e-26 Identity = 72/229 (31.44%), Postives = 115/229 (50.22%), Query Frame = 1 Query: 106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 774 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.905e-26 Identity = 72/229 (31.44%), Postives = 115/229 (50.22%), Query Frame = 1 Query: 106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 774 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231 The following BLAST results are available for this feature:
BLAST of CX047026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX047026 ID=CX047026; Name=CX047026; organism=Citrus sinensis; type=EST; length=865bpback to top |