CX047026

Overview
NameCX047026
Unique NameCX047026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2122 contig Csv1_Contig2122:28..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.369e-29
Identity = 75/244 (30.74%), Postives = 127/244 (52.05%), Query Frame = 1
Query:   91 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 798
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP+ +E + +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + + K  D++ + +    I   + F  G +  +TGG++ G    I   E      + + +++  G +F T    VF +G+  +P +S+
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLK--KTDKTDVKLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.707e-29
Identity = 78/229 (34.06%), Postives = 122/229 (53.28%), Query Frame = 1
Query:   94 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATR--LGNVFTIGK 774
            G  +HLK L AP ++ + K    +  KPS GPH   E +PL+LI+R+ LK A T RE   I+  + +LVD K R D  +  G MDV+SIP+   N+R++ D     RL  I   E+K KL KV   +  + G   + ++DGR        +K  D++ ++L +  + + ++FD G+ V+VT GR  GR+G +      +G    I ++D    E + R    N+  +GK
Sbjct:    5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIGRV------EGIGTIIEMRDLENPELSYRGVKENLIVVGK 227          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.836e-27
Identity = 77/238 (32.35%), Postives = 121/238 (50.84%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIK 819
            HLKR+ AP+ W + +    +  KP  G H     +PL+++LR+ LK A    E+  IL +  VLVD KVR D  Y  G  D +SIP  N N+R++    G+F L  + D  A  K+CK+ +    + G   +N +DG T+   +   K  D++ L +   KI +   + VG++VMVT G++ G +G +K  +  + S     +      +F T    VF IGK +      P  +G+K
Sbjct:    5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICKIVNKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKVKEIKVVRSSAPNTVVITTPEGDFETIEQYVFVIGKDS------PAVQGVK 233          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.554e-26
Identity = 78/232 (33.62%), Postives = 116/232 (50.00%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 798
            H KRL+ PK W + K G  +      GPH     LPL +I+R+ LK     RE   IL +  VLVD   R D  +P G  DV+++P  NE +R+L D KGR  LH + +     KLC++ +    + G   +N  DG  I   +      D++ L +   ++ + +KF+VGN+ MV GG++ G  G I++ RE       T+ I      +F T    V  IG+  KP + L
Sbjct:    3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCRINNKTTVKGGKFQLNLNDGTNIIGSNE-YGTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE-DKPEIRL 229          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.462e-26
Identity = 74/229 (32.31%), Postives = 117/229 (51.09%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI---RYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 774
            H+ R  AP   M+ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR+L D     R   I  +EA++K  ++ +    ++G   +N  DGR I   +      K   T+K++L + +I +       +  +  GGRN G  GI+KN    K     +  I ++   G+ + T + NV +IG+
Sbjct:    3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFVGGRNVGIHGIVKNINLSKFKSRKYSVITLESRDGNTYQTNIMNVMSIGR 231          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.905e-26
Identity = 72/229 (31.44%), Postives = 115/229 (50.22%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 774
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.905e-26
Identity = 72/229 (31.44%), Postives = 115/229 (50.22%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 774
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.905e-26
Identity = 72/229 (31.44%), Postives = 115/229 (50.22%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 774
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.905e-26
Identity = 72/229 (31.44%), Postives = 115/229 (50.22%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 774
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.905e-26
Identity = 72/229 (31.44%), Postives = 115/229 (50.22%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 774
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
The following BLAST results are available for this feature:
BLAST of CX047026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_METMP4.369e-2930.7430S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_KORCO5.707e-2934.0630S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_UNCMA1.836e-2732.3530S ribosomal protein S4e OS=Uncultured methanogen... [more]
RS4E_METAC1.554e-2633.6230S ribosomal protein S4e OS=Methanosarcina acetiv... [more]
RS4E_SULSO3.462e-2632.3130S ribosomal protein S4e OS=Sulfolobus solfataric... [more]
RS4E_SULIY5.905e-2631.4430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIN5.905e-2631.4430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIM5.905e-2631.4430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIL5.905e-2631.4430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIK5.905e-2631.4430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F11-L22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047026 ID=CX047026; Name=CX047026; organism=Citrus sinensis; type=EST; length=865bp
TGTGAGTGCATTTCACTTCGTTTTTGTTTTGCAGGACTGTGACACGCCGT
TGGCGAATCCAAGCTCAGGCTCACGAACACAAAAATGGCGAGAGGTTTGA
AGAAACATTTGAAGAGGCTTAATGCCCCAAAGCACTGGATGCTTGACAAA
CTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAG
GGAGTGTTTGCCCTTAATTCTTATCTTACGTAACCGCTTGAAGTATGCTC
TTACATACCGAGAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTT
GATGCTAAGGTTCGCACAGATAAGACTTACCCTGCTGGGTTCATGGATGT
TGTGTCAATTCCAAAGACGAATGAGAACTTCCGTCTCCTTTACGACACCA
AGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAGGAGGCTAAGTTCAAG
CTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAAGGGAATCCCTTACAT
CAACACTTATGATGGGAGGACTATTCGCTACCCAGACCCACTCATCAAGG
CCAATGATACCATCAAGCTGGACCTGGAGACTAACAAGATCACCGAGTTC
ATCAAGTTTGATGTTGGAAATGTTGTGATGGTGACTGGAGGGAGAAACAG
AGGACGTGTTGGAATCATTAAGAACAGAGAAAAGCATAAGGGTAGCTTTG
AAACTATCCACATCCAGGATGCTCTTGGTCATGAGTTTGCAACTCGTCTT
GGAAATGTGTTCACCATTGGCAAGGGTACAAAGCCATGGGTTTCTCTTCC
CAAGGGCAAGGGTATTAAACTATCCATCATTGAGGAGGNCAGGAAGAGAC
AAGCCCTGGCGACTT
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