CX047026

Overview
NameCX047026
Unique NameCX047026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2122 contig Csv1_Contig2122:28..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.905e-26
Identity = 72/229 (31.44%), Postives = 115/229 (50.22%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 774
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.718e-25
Identity = 71/226 (31.42%), Postives = 111/226 (49.12%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDT---IKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGK 774
            HL+R  +P+ W +++ G  ++ KPS GPH +   +PL ++LR+   YA T RE   I+ + +V VD KVR D  YP G MDV+ +   NE +R++ D     R   I   EA  K+C++      + G   +N +DGR I       +  +T   + ++LE  K+ ++        V+   G N GR G + N  +     + I    A   EF T L  +  IGK
Sbjct:    3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTLINWVRSFRKRDAIATVKAKDSEFRTVLNYLLVIGK 228          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.244e-25
Identity = 77/232 (33.19%), Postives = 115/232 (49.57%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 798
            H KRL+ PK W + + G  +      GPH     LPL LI+R+ LK     RE   IL +  VLVD   R D  +P G  DV+++P  NE +R+L D KGR  L+ + +     KLC++ +    + G   +N  DG  I   +      D++ L +    + + +KF+VGN+ MV GG++ G  G I++ RE       T+ I      +F T    V  IG+  KP + L
Sbjct:    3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE-DKPEIRL 229          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.999e-25
Identity = 77/232 (33.19%), Postives = 112/232 (48.28%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 798
            H KRL+ P+ W   K G  +      GPH     LPL +I+R+ LK     RE   IL +  VLVD   R D  +P G  DV+++P  NE +R+  D KGR  LH +       KLC++ +    + G   +N  DG  I   +      D++ L L   +I + ++F VGN+ MV GG++ G +G I + RE       T+ I      +F T    V  IG+  KP + L
Sbjct:    3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNILGSNE-YSTKDSLILSLPDKQIVKHLQFKVGNLAMVVGGQHSGEIGKITEIREVKSSRHNTVAISGET--DFETIEDYVIVIGE-DKPEIRL 229          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.481e-24
Identity = 70/190 (36.84%), Postives = 99/190 (52.11%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 663
            HL+R  AP  W +  K+GG +  + S GPH     LPL +I+R+ LKYA T RE   I+ + +V +D  +R D  +P G MDVV I  T E +R++ D K  + L  I  EEA  KL +V      + G   ++ +DGR +     +   IK  DT+  DL+   I   I F +G   +VT G N G  G
Sbjct:    3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNLIVSQDVGRHIKTFDTVLYDLQNKNIKMHIPFKLGAYAVVTRGGNVGFSG 192          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 69/230 (30.00%), Postives = 113/230 (49.13%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKN---REKHKGSFETIHIQDALGHEFATRLGNVFTIG 771
            H+ R  AP    L K    +  + + GPHK  E +PL L+L++ L  A T RE   ++++  ++VD +VR D  +P G MDV+SIP ++  FR++ D         I  E+AK+K  ++ +    + G   +N  DGR I  P   +   +     T+K+++ +  I +  +   G   ++ GGRN G  G+IK     +  K  +  + I+   G    T L NV  IG
Sbjct:    3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKYAIIIGGRNVGLHGVIKTIQYAKYKKRKYSIVTIEQKNGESVQTNLQNVMVIG 232          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.231e-23
Identity = 73/190 (38.42%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPD--PLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 663
            HL+R  AP  W +  K GG +  KPS GPH     LPL +++R+ L+YA T RE   I+ + ++ VD  VR D  +P G MDV+ I  T E +R++ D    + L  I   EA  KL +V        G   ++ +DGR  I  PD    IK  DTI  DLE   I   I   +G V +VT G N G  G
Sbjct:    3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHGSNVGFSG 192          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.743e-23
Identity = 68/190 (35.79%), Postives = 99/190 (52.11%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 663
            HL++  AP  W +  K GG +A +PS+GPH     LPL +++R+ L+YA T RE   I+ + ++ VD  VR D  +P G MDVV I  T E +R++ D    + L  I   EA  K  +V        G   ++ +DGR +  P  +   IK  DT+  DLE   I   +   +G + +VT G N G VG
Sbjct:    3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQLAVVTHGGNIGFVG 192          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.583e-23
Identity = 64/238 (26.89%), Postives = 116/238 (48.74%), Query Frame = 1
Query:   85 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 798
            MA+G+KKH KR+++       K  G F  K SSGPH   + + L+ I++     A   +E   ++    + V+ K      +P   MD +S P  N+++R+L    G+  ++ I   E   K+CKV  +         I T D R ++     IK  D++ +    ++I   +KF+VG++ ++T G++ G + +IK   K K   + IH++   G +   +  ++  IG+     +SL
Sbjct:    1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIGESKTSILSL 238          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.679e-23
Identity = 65/187 (34.76%), Postives = 98/187 (52.41%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRG 654
            HL+R  +P  W +  K GG +A +PS GPH     +PL L++R+ L+YA T RE   I+ + ++ VD  VR +  +P G MDVV I  T E +R++ D +  + L  I  EEA  KL +V      + G   ++ +DGR +  P      IK  D++  DL+   +   I   +G   +VT G N G
Sbjct:    3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVG 189          
The following BLAST results are available for this feature:
BLAST of CX047026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_SULIA5.905e-2631.4430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_CALMQ1.718e-2531.4230S ribosomal protein S4e OS=Caldivirga maquilinge... [more]
RS4E_METMA2.244e-2533.1930S ribosomal protein S4e OS=Methanosarcina mazei ... [more]
RS4E_METBF4.999e-2533.1930S ribosomal protein S4e OS=Methanosarcina barker... [more]
RS4E_PYRIL2.481e-2436.8430S ribosomal protein S4e OS=Pyrobaculum islandicu... [more]
RS4E_SULTO3.240e-2430.0030S ribosomal protein S4e OS=Sulfolobus tokodaii G... [more]
RS4E_PYRAR1.231e-2338.4230S ribosomal protein S4e OS=Pyrobaculum arsenatic... [more]
RS4E_PYRCJ2.743e-2335.7930S ribosomal protein S4e OS=Pyrobaculum calidifon... [more]
RS4_BIGNA3.583e-2326.8940S ribosomal protein S4 OS=Bigelowiella natans GN... [more]
RS4E_THENV4.679e-2334.7630S ribosomal protein S4e OS=Thermoproteus neutrop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F11-L22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047026 ID=CX047026; Name=CX047026; organism=Citrus sinensis; type=EST; length=865bp
TGTGAGTGCATTTCACTTCGTTTTTGTTTTGCAGGACTGTGACACGCCGT
TGGCGAATCCAAGCTCAGGCTCACGAACACAAAAATGGCGAGAGGTTTGA
AGAAACATTTGAAGAGGCTTAATGCCCCAAAGCACTGGATGCTTGACAAA
CTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAG
GGAGTGTTTGCCCTTAATTCTTATCTTACGTAACCGCTTGAAGTATGCTC
TTACATACCGAGAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTT
GATGCTAAGGTTCGCACAGATAAGACTTACCCTGCTGGGTTCATGGATGT
TGTGTCAATTCCAAAGACGAATGAGAACTTCCGTCTCCTTTACGACACCA
AGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAGGAGGCTAAGTTCAAG
CTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAAGGGAATCCCTTACAT
CAACACTTATGATGGGAGGACTATTCGCTACCCAGACCCACTCATCAAGG
CCAATGATACCATCAAGCTGGACCTGGAGACTAACAAGATCACCGAGTTC
ATCAAGTTTGATGTTGGAAATGTTGTGATGGTGACTGGAGGGAGAAACAG
AGGACGTGTTGGAATCATTAAGAACAGAGAAAAGCATAAGGGTAGCTTTG
AAACTATCCACATCCAGGATGCTCTTGGTCATGAGTTTGCAACTCGTCTT
GGAAATGTGTTCACCATTGGCAAGGGTACAAAGCCATGGGTTTCTCTTCC
CAAGGGCAAGGGTATTAAACTATCCATCATTGAGGAGGNCAGGAAGAGAC
AAGCCCTGGCGACTT
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