CX047026

Overview
NameCX047026
Unique NameCX047026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2122 contig Csv1_Contig2122:28..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.982e-23
Identity = 73/234 (31.20%), Postives = 112/234 (47.86%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--------RYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN---RGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGK 774
            H+ R  AP    + K    +  +  +GPHK +E +PL ++L+  LK   T RE   I+    VLVD KVR D  YP G MDVV IP  +   R++ D        +I  E+AK+K  ++ +    + G+  +N  DGR I        +Y  P +    T+K++L   KIT       G   M+ GGRN    G++  I+  +  +  +  + ++   G  F T L NV  IG+
Sbjct:    3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTL---TTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKISKIQLAKYKRIKYSLVTLEGKDGSTFQTNLINVMAIGE 233          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.757e-22
Identity = 74/226 (32.74%), Postives = 109/226 (48.23%), Query Frame = 1
Query:   97 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 768
            +K+HL+ L  P+ W +  K  G +  KPS GPH     +P+ + LR+ L  A   REV  +L    VLVD +   D  +P G  DV++IP+ NE +R+L D +G+  L  I  EEA  K  K +R V      I Y  T DGRT    D   K +  +  ++   KI E I  +      +  G++ GR+G+IK   K    +  I   +  G    T L N+  +
Sbjct:    5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVIKEVIKTDMPWPNIVRLEVAGEVGETWLDNIIPV 228          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.505e-21
Identity = 69/192 (35.94%), Postives = 94/192 (48.96%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR---TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 669
            HL+R  AP  W +  K GG +  +PS GPH     LPL LI+R+ LKYA T  E   I+ + +V VD  VR D  +P G MDV+ I  T E +R++ D    + L  I  EEA  KL +V      + G   ++ +DGR   T       IK  D++  DL    I   I   +G   +V  G N G  G +
Sbjct:    3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.470e-21
Identity = 67/228 (29.39%), Postives = 113/228 (49.56%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDL---ETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF--ETIHIQDALGHEFATRLGNVFTIGK 774
            HLKR+ +PK W + +    F  K S GPH ++  LP+++  R+++      +E   +L +R ++V+ +         G  D+VSIPK+ +++R+L D KGR     I ++ A  +L K+ +    + G   +N  DG  +   D   K+ D+I L L   + N+I +   F  GN+ M+ GG++ G VG I       GS     I   ++ G  F T    V  +G+
Sbjct:    4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVGRIIEHIPVPGSLPNRVILKDESSGESFETIDEYVVMVGR 229          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.757e-21
Identity = 72/232 (31.03%), Postives = 107/232 (46.12%), Query Frame = 1
Query:  112 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKG-SFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPK 804
            KRL   +   + +    + P P+ G H   + + L+ I+R+ LK +   RE   IL    V VD K   +K +  GFMDV+ I    E++R++Y+ +G   L     E A  KL KVRS          + T+DGRT    D   K  D   + +   KI+E IK   GN   +T G +  + G I   E  +G S   +H Q+     F+T   +VF IG     +V  P+
Sbjct:    6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEG----FSTIKDHVFMIGSSKFSFVLSPE 231          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.174e-20
Identity = 70/239 (29.29%), Postives = 111/239 (46.44%), Query Frame = 1
Query:  106 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP-----LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREK---HKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 798
            H+ RL AP      K    +  + S GPH   + +PL L+LR+ L +  + +E   I+    VLVD +VR D  YP G MDV++IP  +   R++ D     +   I +EE+KFKL ++ +    + G+   N  DGR +           +    T+K+ +   +I     F     VM  GG+N G +G +K  +        +  + I+   G E+ T L N   IG+  KP V +
Sbjct:    3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGKNAGIIGQLKRIQTSPYKTRRYSIVVIRSPDGSEYETNLENAMVIGE-EKPEVKV 240          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.324e-20
Identity = 68/221 (30.77%), Postives = 103/221 (46.61%), Query Frame = 1
Query:  112 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNRE-KHKGSFETIHIQDALGHEFATRLGNVFTIG 771
            KRL  P+   + +    + P P  G HK+   + L+ I+R+ L+ +   RE   IL    V VD KV  ++ +  GFMDV+ I  + E++R++Y+ +G   L S   + A  K  +V++          +  +DGR +   D  I   D +   L   KITE IK   GN   +TGG + G  G I   E K   S   +H  +     F T   +VF IG
Sbjct:    6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTISKIEIKESSSANLVHFDEG----FTTVKDHVFVIG 220          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.132e-19
Identity = 59/212 (27.83%), Postives = 98/212 (46.23%), Query Frame = 1
Query:   97 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALG 729
            +  H KRL+ PK W +++    F  K  +GPH     +PL+++LR+ L+Y     E    +    VLV+     D   P G  D+++ P  +E +R+  D  GR  L  I  + A  KL KV        G   +N +DG  +   +      D++ +D +TN+I    +++ G +V    G++ G +G I       GS   T+ + D  G
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDDENG 211          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.132e-19
Identity = 59/212 (27.83%), Postives = 98/212 (46.23%), Query Frame = 1
Query:   97 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALG 729
            +  H KRL+ PK W +++    F  K  +GPH     +PL+++LR+ L+Y     E    +    VLV+     D   P G  D+++ P  +E +R+  D  GR  L  I  + A  KL KV        G   +N +DG  +   +      D++ +D +TN+I    +++ G +V    G++ G +G I       GS   T+ + D  G
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDDENG 211          
BLAST of CX047026 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.919e-18
Identity = 56/201 (27.86%), Postives = 98/201 (48.76%), Query Frame = 1
Query:   97 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPD-PLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGS 696
            +  H KRL  PK W +++   A+  K ++GPH   E +PL+++LR+ L Y  + +E    L Q  +L++    +D+  P G  D+++  +  E +R+  D  GR  L  I ++ A  KL K+        G   ++ +DG T+   D      ND+I +  +  +I     ++ G +V    G + GR+G I   +   GS
Sbjct:    1 MTNHQKRLAVPKSWPVERKEEAYTTKAAAGPH-GEEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVEDATAYDTNDSIVVSNDGEEIVAHFTYEEGALVTAVSGAHAGRIGTIDEIQVTPGS 200          
The following BLAST results are available for this feature:
BLAST of CX047026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_SULAC7.982e-2331.2030S ribosomal protein S4e OS=Sulfolobus acidocalda... [more]
RS4E_NANEQ6.757e-2232.7430S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]
RS4E_PYRAE1.505e-2135.9430S ribosomal protein S4e OS=Pyrobaculum aerophilu... [more]
RS4E_METHJ7.470e-2129.3930S ribosomal protein S4e OS=Methanospirillum hung... [more]
RS4E_THEAC9.757e-2131.0330S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_METS52.174e-2029.2930S ribosomal protein S4e OS=Metallosphaera sedula... [more]
RS4E_THEVO6.324e-2030.7730S ribosomal protein S4e OS=Thermoplasma volcaniu... [more]
RS4E_HALSA9.132e-1927.8330S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALS39.132e-1927.8330S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_NATPD5.919e-1827.8630S ribosomal protein S4e OS=Natronomonas pharaoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F11-L22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047026 ID=CX047026; Name=CX047026; organism=Citrus sinensis; type=EST; length=865bp
TGTGAGTGCATTTCACTTCGTTTTTGTTTTGCAGGACTGTGACACGCCGT
TGGCGAATCCAAGCTCAGGCTCACGAACACAAAAATGGCGAGAGGTTTGA
AGAAACATTTGAAGAGGCTTAATGCCCCAAAGCACTGGATGCTTGACAAA
CTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAG
GGAGTGTTTGCCCTTAATTCTTATCTTACGTAACCGCTTGAAGTATGCTC
TTACATACCGAGAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTT
GATGCTAAGGTTCGCACAGATAAGACTTACCCTGCTGGGTTCATGGATGT
TGTGTCAATTCCAAAGACGAATGAGAACTTCCGTCTCCTTTACGACACCA
AGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAGGAGGCTAAGTTCAAG
CTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAAGGGAATCCCTTACAT
CAACACTTATGATGGGAGGACTATTCGCTACCCAGACCCACTCATCAAGG
CCAATGATACCATCAAGCTGGACCTGGAGACTAACAAGATCACCGAGTTC
ATCAAGTTTGATGTTGGAAATGTTGTGATGGTGACTGGAGGGAGAAACAG
AGGACGTGTTGGAATCATTAAGAACAGAGAAAAGCATAAGGGTAGCTTTG
AAACTATCCACATCCAGGATGCTCTTGGTCATGAGTTTGCAACTCGTCTT
GGAAATGTGTTCACCATTGGCAAGGGTACAAAGCCATGGGTTTCTCTTCC
CAAGGGCAAGGGTATTAAACTATCCATCATTGAGGAGGNCAGGAAGAGAC
AAGCCCTGGCGACTT
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