CX047013

Overview
NameCX047013
Unique NameCX047013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FBRL_ENCCU (rRNA 2'-O-methyltransferase fibrillarin OS=Encephalitozoon cuniculi GN=NOP1 PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.412e-60
Identity = 115/168 (68.45%), Postives = 145/168 (86.31%), Query Frame = 3
Query:  288 KVVVEPH-RHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            KV+VEPH R  GV+I++GKED L+T+NLV G +VY EKR++V  E G KVEYR+WN +RSKLAA ++ G +NI ++PG++VLYLGA+SGTTVSHVSDIVG +GVVYAVEFS RSGRDL+NM+ KR N++PIIEDAR+P++YRMLV +VD IFSDV+QPDQ RI+ALNA
Sbjct:   46 KVLVEPHPRFPGVYISRGKEDLLLTRNLVPGVSVYGEKRVAVDLE-GMKVEYRVWNAYRSKLAAGIVCGAENIHMEPGSKVLYLGASSGTTVSHVSDIVGKDGVVYAVEFSERSGRDLINMSMKRPNIVPIIEDARYPSRYRMLVPIVDCIFSDVSQPDQTRIVALNA 212          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FBRL_GIALA (rRNA 2'-O-methyltransferase fibrillarin OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.119e-57
Identity = 117/169 (69.23%), Postives = 138/169 (81.66%), Query Frame = 3
Query:  285 SKVVVEPH-RHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            +K +V+PH +++G+FI+ G+ D LVTK+L  G AVY EKRISV+  + +K+EYR WNPFRSKL AAV   V ++ IKPGA+VLYLGAASGTTVSHVSDIVGP G VYAVEFS RSGRDL+ +AK RTNV PII DARHP KYRM+V  VD IFSDVAQPDQARI+A NA
Sbjct:   92 AKTMVKPHPKYDGIFISHGRGDVLVTKSLAPGVAVYGEKRISVEGTE-SKIEYREWNPFRSKLGAAVRLNVLDMPIKPGAKVLYLGAASGTTVSHVSDIVGPTGAVYAVEFSQRSGRDLLEVAKARTNVYPIIADARHPYKYRMIVPEVDCIFSDVAQPDQARIVAENA 259          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FBRL_LEIMA (rRNA 2'-O-methyltransferase fibrillarin OS=Leishmania major PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.251e-57
Identity = 113/171 (66.08%), Postives = 137/171 (80.12%), Query Frame = 3
Query:  285 SKVVVEPHR-HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDG--TKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            +KV+VEPH  H GVFI+K K D+L T N+V G +VY EKRI +    G   K EYR+WNP+RSKLA+A+  GV +I + PG++VLYLG A+GTTVSHVSD+VGP G+VYAVEFSHR GRDLV M+K+R  ++PI+EDAR+P KYRMLV MVD IF DVAQPDQARILALNA
Sbjct:   57 AKVIVEPHMLHPGVFISKAKTDSLCTLNMVPGISVYGEKRIELGATQGGDDKKEYRLWNPYRSKLASAIYAGVSSIHMGPGSKVLYLGGATGTTVSHVSDLVGPEGMVYAVEFSHRVGRDLVEMSKRRP-IVPIVEDARYPMKYRMLVPMVDCIFMDVAQPDQARILALNA 226          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_PYRKO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus kodakaraensis GN=flpA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.623e-40
Identity = 91/166 (54.82%), Postives = 112/166 (67.47%), Query Frame = 3
Query:  297 VEPHRHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            V+ HR  GV+I    +  + + TKNLV G+ VY E+ +  + E     EYRIWNP RSKL AA+L G+ N  IKPG+ VLYLG ASGTT SHVSDIVG  G V+ VEFS R  R+LV + ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA
Sbjct:    3 VKKHRFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVVKFEGE-----EYRIWNPTRSKLGAAILNGLKNFPIKPGSTVLYLGVASGTTASHVSDIVGWEGKVFGVEFSPRVLRELVPLVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNA 163          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_THEGJ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=flpA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.768e-40
Identity = 91/166 (54.82%), Postives = 112/166 (67.47%), Query Frame = 3
Query:  297 VEPHRHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            V+ HR  GV+I    +  + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA+L G+ N  IKPG+ VLYLG ASGTT SHVSDIVG  G ++ VEFS R  R+LV + ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA
Sbjct:    3 VKKHRFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKFEGE-----EYRIWNPSRSKLGAAILNGLKNFPIKPGSTVLYLGIASGTTASHVSDIVGWEGKIFGVEFSPRVLRELVPIVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNA 163          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_PYRFU (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus furiosus GN=flpA PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.616e-40
Identity = 90/168 (53.57%), Postives = 113/168 (67.26%), Query Frame = 3
Query:  291 VVVEPHRHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            V V+ H+  GV++    +  + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA++ G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G +Y +EFS R  R+LV + ++R N+IPI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA
Sbjct:    2 VEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRSKLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNA 164          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_THEON (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus onnurineus (strain NA1) GN=flpA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.374e-39
Identity = 89/166 (53.61%), Postives = 112/166 (67.47%), Query Frame = 3
Query:  297 VEPHRHEGV--FIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            ++ H+  GV  FI +   + + TKNLV G+ VY E+ I  + E     EYR+WNP RSKL AA+L G+ +  IKPG+ VLYLG ASGTT SHVSDIVG  G V+ VEFS R  R+LV + ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA
Sbjct:    3 IKKHKFPGVYVFIDEDGSEKIATKNLVPGQKVYGERLIKFEGE-----EYRVWNPRRSKLGAAILNGLKHFPIKPGSTVLYLGVASGTTASHVSDIVGWEGKVFGVEFSPRVLRELVPIVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNA 163          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_PYRAB (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus abyssi GN=flpA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.344e-39
Identity = 87/168 (51.79%), Postives = 112/168 (66.67%), Query Frame = 3
Query:  291 VVVEPHRHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            V V+ H+  GV+I    +  + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA++ G+ N  IKPG  VLYLG ASGTT SHVSD++G  G ++ +EFS R  R+LV + + R N++PI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA
Sbjct:    2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNA 164          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_PYRHO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus horikoshii GN=flpA PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.061e-39
Identity = 89/168 (52.98%), Postives = 112/168 (66.67%), Query Frame = 3
Query:  291 VVVEPHRHEGVF--IAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            V V+ H+  GV+  I     + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA++ G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G ++ +EFS R  R+LV + ++R N++PI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA
Sbjct:    2 VEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNA 164          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_THESM (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=flpA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.819e-39
Identity = 87/166 (52.41%), Postives = 111/166 (66.87%), Query Frame = 3
Query:  297 VEPHRHEGVF--IAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            V+ H+  GV+  I     + + TKNLV G+ VY E+ +  + E     EYRIWNP RSKLAAA+L  + N  IKPG  VLYLG ASGTT SHVSDI+G  G ++ +EFS R  R+LV + ++R N++PI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA
Sbjct:    3 VKKHKFPGVYTVIEDDGSERIATKNLVPGQKVYGERIVKWKGE-----EYRIWNPNRSKLAAAILNDLKNFPIKPGTTVLYLGIASGTTASHVSDIIGWEGKIFGIEFSPRVLRELVPLVEERRNIVPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNA 163          
The following BLAST results are available for this feature:
BLAST of CX047013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FBRL_ENCCU1.412e-6068.45rRNA 2'-O-methyltransferase fibrillarin OS=Encepha... [more]
FBRL_GIALA1.119e-5769.23rRNA 2'-O-methyltransferase fibrillarin OS=Giardia... [more]
FBRL_LEIMA7.251e-5766.08rRNA 2'-O-methyltransferase fibrillarin OS=Leishma... [more]
FLPA_PYRKO1.623e-4054.82Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THEGJ2.768e-4054.82Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRFU3.616e-4053.57Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THEON1.374e-3953.61Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRAB2.344e-3951.79Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRHO3.061e-3952.98Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THESM6.819e-3952.41Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F04-L8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047013 ID=CX047013; Name=CX047013; organism=Citrus sinensis; type=EST; length=789bp
TAAGCACACTCATAATCTCAACATAGCCACTCTTTCACTCTTCATCTCAC
TCTTTGTATTCTTTGTAGCCGGACAGAGCATCAAACATGAGACCTCCAAG
AGGACGCGGTGGTGGAGGTGGGTTCAGGGGAGGCAGAGGTGATGGAGGAG
GAAGAGGAAGAGGTGGCGGCCGAGGTGGTGGAGGTGGAAGAGGTGGTGGT
AGCGCTATGAGAGGCCGAGGTGGCGGTCGTGGCGGTGGCCGAGGTGGAGG
AAGAGGCCGCGGTGGTGGAGGAATGAAGGGTGGAAGCAAGGTTGTAGTTG
AGCCTCATAGACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGCC
CTTGTCACTAAGAATCTCGTCGCCGGTGAGGCTGTATACAATGAGAAGAG
GATCTCCGTCCAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGGA
ATCCCTTCCGTTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAAT
ATTTGGATTAAACCTGGTGCTAGGGTTCTATACCTTGGTGCTGCTTCCGG
CACAACTGTCTCTCATGTTTCTGACATTGTTGGCCCTAATGGAGTAGTTT
ATGCAGTGGAATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATATGGCA
AAGAAGAGAACTAATGTTATACCCATAATTGAAGATGCTAGACATCCTGC
CAAGTACCGTATGTTGGTCGGTATGGTAGATGTAATATTTTCTGACGTTG
CCCAACCGGATCAGGCGAGGATTTTAGCCCTGAATGCAT
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