CX047013

Overview
NameCX047013
Unique NameCX047013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_PYRAE (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum aerophilum GN=flpA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.679e-37
Identity = 88/171 (51.46%), Postives = 116/171 (67.84%), Query Frame = 3
Query:  291 VVVEPH-RHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            V V+PH RH GV++ K ++  + + TKNL  G  VY E+ I    +     EYR WNP+RSKLAAA+L G+  + IK G  +LYLGAASGTT SH+SDIVG NG++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   V  VDV++ DVAQP QA+ILA NA
Sbjct:    6 VEVKPHERHYGVYVVKFEDGTERIATKNLTPGRRVYGERLIKWGGD-----EYREWNPYRSKLAAAILNGLKLVPIKEGTHILYLGAASGTTPSHISDIVGENGLIYSVEFSPRVFREFMEKLVDQGRRNVVPILGDARFPYQYAHYVKGVDVVYIDVAQPAQAKILADNA 171          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_AERPE (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Aeropyrum pernix GN=flpA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.335e-37
Identity = 83/167 (49.70%), Postives = 111/167 (66.47%), Query Frame = 3
Query:  294 VVEPHRHEGVFIAKGKEDAL--VTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            V E  R  GV++ + ++ +L   TKNLV G+ VY E+      E     EYR WN +RSKLAAA+L G+  + +K G R+LYLG ASGTT SH+SDI+GP G +Y VEF+ R  RDL+ + + R N+ PI+ DAR P KYR LV  VD +++DVAQP+QA I+  NA
Sbjct:    7 VREHDRWRGVYVVELEDGSLRIATKNLVPGQRVYGERIFRYNGE-----EYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNA 168          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_PYRIL (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=flpA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.137e-36
Identity = 86/172 (50.00%), Postives = 117/172 (68.02%), Query Frame = 3
Query:  294 VVEPHRHE---GVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            VV+  +HE   GV++ K ++  + L TKNL  G+ VY E+ I  ++E     EYR WNP+RSKLAAA++ G+  I I+ G  +LYLGAASGTT SH+SDIVG  G++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   V  VDV++ DVAQP QA+ILA NA
Sbjct:    5 VVDVRKHEHHFGVYVVKFEDGTERLATKNLTPGKRVYGERLIKWRDE-----EYREWNPYRSKLAAAIVNGIKFIPIQEGTHMLYLGAASGTTPSHISDIVGERGLIYSVEFSPRVFREFIEKLVDQGRRNVVPILGDARFPYQYAHYVKGVDVVYIDVAQPAQAKILADNA 171          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_PYRCJ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=flpA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.216e-36
Identity = 85/171 (49.71%), Postives = 114/171 (66.67%), Query Frame = 3
Query:  291 VVVEPHR-HEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            V V PH  H GV++ + ++  + L T+NL  G  VY E+ I  +      VEYR WNP+RSKLAAA+L G+  + I+ G  +LYLGAASGTT SH+SDIVG  G++Y+VEFS R  R+ +   + + R NVIPI+ DAR P +Y   +  VDV++ DVAQP QA+ILA NA
Sbjct:    6 VEVRPHELHYGVYVVRFEDGTERLATRNLTPGRRVYGERLIKWEG-----VEYREWNPYRSKLAAAILNGLKLVPIREGTHMLYLGAASGTTPSHISDIVGERGLIYSVEFSPRVFREFMEKLVDQGRRNVIPILGDARFPYQYAHYIKGVDVVYIDVAQPAQAKILADNA 171          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_NANEQ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Nanoarchaeum equitans GN=flpA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.204e-35
Identity = 80/165 (48.48%), Postives = 106/165 (64.24%), Query Frame = 3
Query:  291 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALN 785
            + V+PH+ EGV+I   K   L+TKNLV G+ VY E+    + E     EYR W PFRSKLA+A+  G+     K G  VLYLG ASGTT SH+SDI+G  G+++ VEF+ R  R+L+ +AKKR N++PI+ DA  P  Y+ +V   DVI+ DVAQP Q  I   N
Sbjct:    7 IKVKPHKLEGVYIGNNK--FLLTKNLVKGQKVYTERIFKSKGE-----EYREWIPFRSKLASAIKKGLKTWPFKKGTIVLYLGIASGTTASHISDIIGEEGIIFGVEFAPRVLRELMFVAKKRKNIVPILADANQPETYQHIVVQSDVIYQDVAQPHQVEIFLKN 164          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_PYRAR (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=flpA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.681e-35
Identity = 83/171 (48.54%), Postives = 115/171 (67.25%), Query Frame = 3
Query:  291 VVVEPH-RHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            V V PH RH GV++ + ++  + + TKNL  G+ VY E+ I    +     EYR WNP+RSKLAAA++ G+  + I+ G  +LYLGAASGTT SH+SDIVG  G++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   +  VDV++ DVAQP QA+ILA NA
Sbjct:    6 VDVRPHERHYGVYVVRFEDGTERIATKNLTPGKRVYGERLIKWGGD-----EYREWNPYRSKLAAAIVNGLKLVPIREGTHMLYLGAASGTTPSHISDIVGEKGLIYSVEFSPRVFREFMEKLVDQGRRNVVPILGDARFPYQYAHYIKGVDVVYIDVAQPAQAKILADNA 171          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_THENV (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=flpA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.872e-34
Identity = 84/171 (49.12%), Postives = 111/171 (64.91%), Query Frame = 3
Query:  291 VVVEPH-RHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            V V PH RH GV+  K ++  + L T+NL  G+ VY E+ +          EYR WNP+RSKLAAA+  G+  + I+ G  +LYLGAASGTT SH+SDIVG  G++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   V  VDV + DVAQP QA+ILA NA
Sbjct:    6 VEVRPHERHFGVYALKFEDGSERLATRNLTPGKRVYGERLVKWGG-----AEYREWNPYRSKLAAAIANGIKFVPIQEGTHILYLGAASGTTPSHMSDIVGERGLIYSVEFSPRVFREFMEKLVDQGRRNVVPILGDARFPYQYAHYVKGVDVAYIDVAQPAQAKILADNA 171          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_METBF (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=flpA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.872e-34
Identity = 86/158 (54.43%), Postives = 104/158 (65.82%), Query Frame = 3
Query:  315 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            +G+F     +  L TKNL  G+ VY EK I+V+      VEYR W+P RSKL A VL    NI +   ++VLYLGAASGTTVSHVSDIV   G VYAVEF+ RS RDL+ +A +R N+ PI+ DA  P  Y  LV  VD+IF DVAQP+QA I A NA
Sbjct:    9 DGIFEVIKDKKQLATKNLDPGKTVYGEKLIAVEG-----VEYRTWDPRRSKLGAMVLKKF-NIPLTKNSKVLYLGAASGTTVSHVSDIVS-EGAVYAVEFAPRSMRDLIGLASRRKNIHPILADAGKPDSYSHLVEPVDLIFQDVAQPNQAEIAARNA 159          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_METMA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanosarcina mazei GN=flpA PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 5.057e-34
Identity = 85/158 (53.80%), Postives = 103/158 (65.19%), Query Frame = 3
Query:  315 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            EG+F     +  L T NL  G+ VY EK ISV+ +     EYR W+P RSKL A VL   D I +K  ++VLYLGAASGTTVSHVSDIV   G VY+VEF+ RS RD + +A +R N+ PI+ DA  P  Y  +V  VDVIF DVAQP+QA I A NA
Sbjct:    9 EGIFEVTKDKKQLSTLNLDPGKVVYGEKLISVEGD-----EYRTWDPRRSKLGAMVLKKFD-IPLKRNSKVLYLGAASGTTVSHVSDIVS-EGAVYSVEFAPRSMRDFIGLASRRKNIFPILADAGKPDSYAHIVEPVDVIFQDVAQPNQAEIAARNA 159          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_SULIY (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=flpA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.604e-34
Identity = 76/146 (52.05%), Postives = 99/146 (67.81%), Query Frame = 3
Query:  351 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            L T+NLV+G  VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA
Sbjct:   27 LCTRNLVSGFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNA 167          
The following BLAST results are available for this feature:
BLAST of CX047013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_PYRAE1.679e-3751.46Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_AERPE8.335e-3749.70Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRIL4.137e-3650.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRCJ9.216e-3649.71Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_NANEQ1.204e-3548.48Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRAR2.681e-3548.54Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THENV3.872e-3449.12Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METBF3.872e-3454.43Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METMA5.057e-3453.80Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIY6.604e-3452.05Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F04-L8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047013 ID=CX047013; Name=CX047013; organism=Citrus sinensis; type=EST; length=789bp
TAAGCACACTCATAATCTCAACATAGCCACTCTTTCACTCTTCATCTCAC
TCTTTGTATTCTTTGTAGCCGGACAGAGCATCAAACATGAGACCTCCAAG
AGGACGCGGTGGTGGAGGTGGGTTCAGGGGAGGCAGAGGTGATGGAGGAG
GAAGAGGAAGAGGTGGCGGCCGAGGTGGTGGAGGTGGAAGAGGTGGTGGT
AGCGCTATGAGAGGCCGAGGTGGCGGTCGTGGCGGTGGCCGAGGTGGAGG
AAGAGGCCGCGGTGGTGGAGGAATGAAGGGTGGAAGCAAGGTTGTAGTTG
AGCCTCATAGACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGCC
CTTGTCACTAAGAATCTCGTCGCCGGTGAGGCTGTATACAATGAGAAGAG
GATCTCCGTCCAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGGA
ATCCCTTCCGTTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAAT
ATTTGGATTAAACCTGGTGCTAGGGTTCTATACCTTGGTGCTGCTTCCGG
CACAACTGTCTCTCATGTTTCTGACATTGTTGGCCCTAATGGAGTAGTTT
ATGCAGTGGAATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATATGGCA
AAGAAGAGAACTAATGTTATACCCATAATTGAAGATGCTAGACATCCTGC
CAAGTACCGTATGTTGGTCGGTATGGTAGATGTAATATTTTCTGACGTTG
CCCAACCGGATCAGGCGAGGATTTTAGCCCTGAATGCAT
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