CX047013

Overview
NameCX047013
Unique NameCX047013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_METM5 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=flpA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.125e-32
Identity = 71/146 (48.63%), Postives = 99/146 (67.81%), Query Frame = 3
Query:  351 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            + TK+L+ G+ VY EK +   N     +EYR+WNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHV+DI   N +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA
Sbjct:   25 IATKSLIPGKRVYGEKLVYSDN-----IEYRVWNPNKSKLGAAIINGLKKMPIKKGTKVLYLGASAGTTPSHVADIA-ENSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNA 164          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_METMP (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis GN=flpA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.181e-32
Identity = 72/146 (49.32%), Postives = 99/146 (67.81%), Query Frame = 3
Query:  351 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            + TK+LV G+ VY EK +   +     +EYRIWNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHV+DI   N +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA
Sbjct:   25 IATKSLVPGKRVYGEKLVYSDS-----IEYRIWNPNKSKLGAAIINGLKKMPIKKGEKVLYLGASAGTTPSHVADIA-ENSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNA 164          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_METM7 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=flpA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.181e-32
Identity = 71/146 (48.63%), Postives = 99/146 (67.81%), Query Frame = 3
Query:  351 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            + TK+LV G+ VY EK +   +     +EYR+WNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHV+DI   N +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA
Sbjct:   25 IATKSLVPGKRVYGEKLVYSDS-----IEYRVWNPNKSKLGAAIINGLKKMPIKKGTKVLYLGASAGTTPSHVADIA-ENSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNA 164          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_METJA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanocaldococcus jannaschii GN=flpA PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.181e-32
Identity = 72/146 (49.32%), Postives = 104/146 (71.23%), Query Frame = 3
Query:  351 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            + TK++V G+ VY+EK I + +E     EYRIWNP +SKLAAA++ G+  + IK  +++LYLGA++GTT SHV+DI    G+VYA+E++ R  R+L++   +R N+IPI+ DA  P +Y  +V  VDVI+ DVAQP+QA IL  NA
Sbjct:   25 IATKSIVKGKKVYDEKIIKIGDE-----EYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNA 164          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_METM6 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=flpA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.073e-32
Identity = 71/146 (48.63%), Postives = 98/146 (67.12%), Query Frame = 3
Query:  351 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            + TK+LV G+ VY EK +   N     +EYR+WNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHV+DI     +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA
Sbjct:   25 IATKSLVPGKRVYGEKLVYSDN-----IEYRVWNPNKSKLGAAIINGLKKMPIKKGTKVLYLGASAGTTPSHVADI-AETSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNA 164          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_SULTO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus tokodaii GN=flpA PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.377e-31
Identity = 77/146 (52.74%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  351 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            L TKNL  G +VY E+   V+      VEYR WN FRSKL  A+L G+    I  G +VLYLGAASGTT SHVSDIV   G VY VEFS R  R+ + +A+ R N+ PI+ DAR P  YR LV  VDV++ D+AQPD+  I   NA
Sbjct:   27 LCTKNLAPGFSVYGERLFKVEG-----VEYREWNAFRSKLGGAILKGLKQNPIVKGTKVLYLGAASGTTPSHVSDIVELEGKVYGVEFSPRVVREFLLVAQHRPNLFPILADARFPQYYRTLVEDVDVLYVDIAQPDETDIAIYNA 167          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_METWO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanobacterium wolfei GN=flpA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.377e-31
Identity = 75/157 (47.77%), Postives = 100/157 (63.69%), Query Frame = 3
Query:  315 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALN 785
            +GVFI +   D+LVT NL  G  VY EK I          EYR+W+P RSK+AAAVL G+    + P +RVLYLGA++GTT SH+SDIV   G VY VEFS R  R+L+ + + R N++P++EDA  P  Y  +V   D+++ DVAQPDQ  +   N
Sbjct:    9 DGVFIMR---DSLVTVNLTPGVRVYGEKLIEWGGS-----EYRVWDPRRSKMAAAVLNGLRGFQLNPESRVLYLGASAGTTASHISDIV-TMGRVYCVEFSPRMMRELIEVCRVRGNMVPLLEDASRPLDYMRMVENADLVYCDVAQPDQTGLFIRN 156          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_META3 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=flpA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.377e-31
Identity = 73/146 (50.00%), Postives = 102/146 (69.86%), Query Frame = 3
Query:  351 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            + TK+LV  + +Y EK I+ ++     +EYRIWNP RSKL AA++ G+  + IK G++VLYLG ++GTT SHV+DI   N  VY+VEF+ R  R+ ++++K R N+IPI+ DA +P +Y  +V  VDVIF DVAQP QA IL  NA
Sbjct:   25 IATKSLVPSKRIYGEKLITGEDN----LEYRIWNPNRSKLGAAIVNGLKTMPIKKGSKVLYLGVSAGTTPSHVADIT-ENSPVYSVEFAPRIMREFLDVSKDRKNLIPILGDATNPVEYSNVVEEVDVIFEDVAQPKQAEILVNNA 165          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_METVO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus voltae GN=flpA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.834e-31
Identity = 71/144 (49.31%), Postives = 98/144 (68.06%), Query Frame = 3
Query:  357 TKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            TK+LV  + VY EK ++V+N      EYR+WNP +SKL A+++ G+  + IK G++VLYLGA++GTT SHV+D V  +  VYAVEF+ R  R+ +   + R N+ PI+ DA  P +Y  +V  VDVIF DVAQP+QA IL  NA
Sbjct:   25 TKSLVPNKRVYGEKLVNVKN-----TEYRVWNPNKSKLGASIINGLKEMPIKKGSKVLYLGASAGTTPSHVAD-VAEDSPVYAVEFAPRIMREFIESCEGRKNLFPILGDANKPEEYANIVEKVDVIFEDVAQPNQAEILIKNA 162          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_SULAC (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus acidocaldarius GN=flpA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.597e-30
Identity = 73/146 (50.00%), Postives = 95/146 (65.07%), Query Frame = 3
Query:  351 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            L TKNL  G  VY E+ I         VEYR WN FRSKLA A++ G+    I  G+++LYLGAASGTT SH+SDIV   G VY+VEFS R  R+L+ +A+ R N+ PI+ DAR P  Y+ LV  VD+++ D+AQP++  I   NA
Sbjct:   27 LCTKNLSPGHNVYGERLIKYGG-----VEYREWNAFRSKLAGAIVKGLKYNPIVKGSKILYLGAASGTTPSHISDIVELQGKVYSVEFSPRVIRELLLVAQYRPNMFPILADARFPQYYKSLVENVDIVYVDIAQPNETEIAMYNA 167          
The following BLAST results are available for this feature:
BLAST of CX047013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_METM52.125e-3248.63Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METMP6.181e-3249.32Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METM76.181e-3248.63Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METJA6.181e-3249.32Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METM68.073e-3248.63Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULTO1.377e-3152.74Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METWO1.377e-3147.77Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_META31.377e-3150.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METVO6.834e-3149.31Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULAC2.597e-3050.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F04-L8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047013 ID=CX047013; Name=CX047013; organism=Citrus sinensis; type=EST; length=789bp
TAAGCACACTCATAATCTCAACATAGCCACTCTTTCACTCTTCATCTCAC
TCTTTGTATTCTTTGTAGCCGGACAGAGCATCAAACATGAGACCTCCAAG
AGGACGCGGTGGTGGAGGTGGGTTCAGGGGAGGCAGAGGTGATGGAGGAG
GAAGAGGAAGAGGTGGCGGCCGAGGTGGTGGAGGTGGAAGAGGTGGTGGT
AGCGCTATGAGAGGCCGAGGTGGCGGTCGTGGCGGTGGCCGAGGTGGAGG
AAGAGGCCGCGGTGGTGGAGGAATGAAGGGTGGAAGCAAGGTTGTAGTTG
AGCCTCATAGACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGCC
CTTGTCACTAAGAATCTCGTCGCCGGTGAGGCTGTATACAATGAGAAGAG
GATCTCCGTCCAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGGA
ATCCCTTCCGTTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAAT
ATTTGGATTAAACCTGGTGCTAGGGTTCTATACCTTGGTGCTGCTTCCGG
CACAACTGTCTCTCATGTTTCTGACATTGTTGGCCCTAATGGAGTAGTTT
ATGCAGTGGAATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATATGGCA
AAGAAGAGAACTAATGTTATACCCATAATTGAAGATGCTAGACATCCTGC
CAAGTACCGTATGTTGGTCGGTATGGTAGATGTAATATTTTCTGACGTTG
CCCAACCGGATCAGGCGAGGATTTTAGCCCTGAATGCAT
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