CX047013

Overview
NameCX047013
Unique NameCX047013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_METTH (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanobacterium thermoautotrophicum GN=flpA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.091e-28
Identity = 71/157 (45.22%), Postives = 99/157 (63.06%), Query Frame = 3
Query:  315 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALN 785
            +GVFI     ++L+T N   G  VY E+ I     D    EYR+W+P RSKLAAA+L G+    +   +RVLYLGA++GTT SH+SDIV  +G VY +EFS R  R+L+ + + R N+ P++EDA  P  Y  +V   D+++ DVAQPDQ R+   N
Sbjct:   11 DGVFIMN---NSLLTINPNPGVKVYGERII-----DWGGREYRVWDPRRSKLAAAILNGLRGFSLNSDSRVLYLGASAGTTASHISDIV-TDGRVYCIEFSPRMMRELLGVCESRKNMAPLLEDASRPLSYLRMVEAADLVYCDVAQPDQTRLFIEN 158          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_THEAC (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermoplasma acidophilum GN=flpA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.285e-25
Identity = 67/148 (45.27%), Postives = 94/148 (63.51%), Query Frame = 3
Query:  360 KNLVA-GEAVYNE--KRISVQNEDGTKVE---YRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALN 785
            KN++  G  +Y    K   V  ED  + E   YR W P RSKLAAA+L G+ N+ I   + +LYLGA++GTTVSHVSDI  P+G +YAVE ++     L+++A++R N+ PI+EDA  P +YR  V  VDVI+ D++Q +Q  I   N
Sbjct:   19 KNMLRIGNKLYTRTSKNKKVYGEDIIRFEHANYREWRPDRSKLAAAILKGLHNMPIGESSSILYLGASTGTTVSHVSDIA-PSGRIYAVEVAYEPFSKLLDLAEQRDNIYPILEDANLPERYRFFVDHVDVIYQDISQRNQIAIFKRN 165          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_ARCFU (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Archaeoglobus fulgidus GN=flpA PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.632e-24
Identity = 68/149 (45.64%), Postives = 93/149 (62.42%), Query Frame = 3
Query:  342 EDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            +D LVTK+       Y EK       DG    YR W P+RSKLAA +L G   + ++   RVLYLGAASGTTVSH++DIV   G++YAVE+S +    L+ + ++R N+IP++ DA  P KY  +V  VD+I+ D+AQ +Q  IL  NA
Sbjct:   12 DDTLVTKSKYGSH--YGEKVF-----DG----YREWVPWRSKLAAMILKG-HRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANA 147          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_THEVO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermoplasma volcanium GN=flpA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.744e-24
Identity = 62/140 (44.29%), Postives = 87/140 (62.14%), Query Frame = 3
Query:  381 AVYNEKRIS--VQNEDGTKVE---YRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALN 785
            +VY E      V  E+ TK+    YR W+P RSK AAA+L G+    I+    VLYLGA++GTT+SH+SDI  P G +Y VE S+     L+++AKKR N+ PI+EDA  P KY   +  VDV++ D++Q +Q +I   N
Sbjct:   24 SVYTETETPQRVYGEEITKINNRTYREWDPRRSKPAAAILNGLRRFPIRENDSVLYLGASTGTTISHISDIC-PAGTIYGVEVSYEPFSKLLDLAKKRNNLYPILEDANSPEKYSFFIEHVDVMYQDISQRNQIQIFKNN 162          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_METMJ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=flpA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.744e-24
Identity = 59/117 (50.43%), Postives = 81/117 (69.23%), Query Frame = 3
Query:  438 YRIWNPFRSKLAAA-VLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALN 785
            YR+W+P+RSKLAA   LGG   + + P  RVLYLGAA+GTTVSHV+D V     VYAVEF+ R  +DL+ +A++R N++PI+ DA  P +Y   +  VD+++ DVAQP+Q  I   N
Sbjct:   25 YRVWDPYRSKLAALYTLGG--GVELTPEMRVLYLGAANGTTVSHVADYVE---TVYAVEFAPRPMQDLLEVARRRRNIVPIMADASRPEEYAPFMEAVDLVYQDVAQPNQVEIAERN 136          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_METTP (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=flpA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.354e-23
Identity = 63/137 (45.99%), Postives = 90/137 (65.69%), Query Frame = 3
Query:  378 EAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            E +Y EK +     DG     R+W+P RSKLAA +L       + P  +VLYLGAA+GTTVS++ DI+   G++YAVE S R+ RDL+ +A++R N+IP++ DA  P  YR +V  VD+++ DVAQ +QA I + NA
Sbjct:   24 EPLYGEKIV-----DGL----RVWDPRRSKLAALLLRYPCLEGVVPSGKVLYLGAANGTTVSYLGDIL-TGGMIYAVEISPRAMRDLLLLAEQRENIIPVLGDAARPETYRRIVEPVDLLYQDVAQRNQAEIASRNA 150          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_HALMA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Haloarcula marismortui GN=flpA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.016e-23
Identity = 66/150 (44.00%), Postives = 90/150 (60.00%), Query Frame = 3
Query:  336 GKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALN 785
            G E +L T+    G+ VY E+         T  ++R W+P RSKL A +  G+D   +  G  VLYLGAA+GTTVSHV+D  GP    YAVEF+ R  R+L++ A+ R N+ P+++DAR P  Y  +V  VDV+  DVA   QAR+  LN
Sbjct:   13 GGETSLATQ----GQPVYGER---------TDGDWRRWDPHRSKLGAMLAHGMDT-GLGGGETVLYLGAAAGTTVSHVADFGGPT---YAVEFAPRPVRELLDAAESRRNLFPLLKDARKPESYAHVVEPVDVVVQDVATRGQARVATLN 145          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_PICTO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Picrophilus torridus GN=flpA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.258e-20
Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  384 VYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNA 788
            VY EK I  +N        R W+P RSKLAAA+L G  +        +LYLGA++GTTVSH+SDI   +G +YAVE S+ S   L ++++ R N+ PI+EDA    +Y+  V   D I+ D+AQ +Q +I   NA
Sbjct:   25 VYGEKIIRKKNS-----YLREWDPRRSKLAAAILKGFKHANFDKKLNILYLGASTGTTVSHLSDIC-ISGRLYAVELSYDSFVKLYSLSQARNNIFPILEDANLVERYKFFVEKCDFIYQDIAQRNQVQIFNQNA 153          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_METHJ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=flpA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.063e-19
Identity = 57/118 (48.31%), Postives = 75/118 (63.56%), Query Frame = 3
Query:  441 RIWNPFRSKLAAAVLGGVDNIWIKP---GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALN 785
            RIW+P  SK+AA       +I  +P    AR+LYLGAA+G+TVS +SD      VVYAVEFS R  R L+ +A+ R N+IP+ EDAR+P +Y   V  VD++  D+AQ DQA I   N
Sbjct:   25 RIWDPGHSKVAALC-----HIHGEPPVRNARILYLGAAAGSTVSFLSDYAE---VVYAVEFSPRPVRSLIRLARARKNIIPLFEDARYPERYLPFVEPVDLLIQDIAQRDQAEIALRN 134          
BLAST of CX047013 vs. ExPASy Swiss-Prot
Match: FLPA_HALLT (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=flpA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.001e-19
Identity = 66/152 (43.42%), Postives = 81/152 (53.29%), Query Frame = 3
Query:  336 GKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-GMVDVIFSDVAQPDQARILALNA 788
            G E  L T+    G  VY E        DG    +R W+P RSKL      G +   +  G  VLYLGAASGTTVSHV+D  GP    YAVEF+ R  RDLV  A+ R  + P+++DAR P +Y  +V   VD I  DVA   QA +   NA
Sbjct:   16 GGETRLATR----GPPVYGEP-----TADG----WRAWDPGRSKLGGMFELGFET-GLSGGETVLYLGAASGTTVSHVADFAGPT---YAVEFAPRPARDLVEAAEPRDRLFPLLKDARTPKRYAHVVESDVDAIVQDVATRGQAEVAVRNA 150          
The following BLAST results are available for this feature:
BLAST of CX047013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_METTH1.091e-2845.22Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THEAC3.285e-2545.27Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_ARCFU3.632e-2445.64Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THEVO4.744e-2444.29Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METMJ4.744e-2450.43Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METTP2.354e-2345.99Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_HALMA4.016e-2344.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PICTO9.258e-2042.96Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METHJ2.063e-1948.31Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_HALLT6.001e-1943.42Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F04-L8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047013 ID=CX047013; Name=CX047013; organism=Citrus sinensis; type=EST; length=789bp
TAAGCACACTCATAATCTCAACATAGCCACTCTTTCACTCTTCATCTCAC
TCTTTGTATTCTTTGTAGCCGGACAGAGCATCAAACATGAGACCTCCAAG
AGGACGCGGTGGTGGAGGTGGGTTCAGGGGAGGCAGAGGTGATGGAGGAG
GAAGAGGAAGAGGTGGCGGCCGAGGTGGTGGAGGTGGAAGAGGTGGTGGT
AGCGCTATGAGAGGCCGAGGTGGCGGTCGTGGCGGTGGCCGAGGTGGAGG
AAGAGGCCGCGGTGGTGGAGGAATGAAGGGTGGAAGCAAGGTTGTAGTTG
AGCCTCATAGACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGCC
CTTGTCACTAAGAATCTCGTCGCCGGTGAGGCTGTATACAATGAGAAGAG
GATCTCCGTCCAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGGA
ATCCCTTCCGTTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAAT
ATTTGGATTAAACCTGGTGCTAGGGTTCTATACCTTGGTGCTGCTTCCGG
CACAACTGTCTCTCATGTTTCTGACATTGTTGGCCCTAATGGAGTAGTTT
ATGCAGTGGAATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATATGGCA
AAGAAGAGAACTAATGTTATACCCATAATTGAAGATGCTAGACATCCTGC
CAAGTACCGTATGTTGGTCGGTATGGTAGATGTAATATTTTCTGACGTTG
CCCAACCGGATCAGGCGAGGATTTTAGCCCTGAATGCAT
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