CX047004

Overview
NameCX047004
Unique NameCX047004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047004 vs. ExPASy Swiss-Prot
Match: GDL76_ARATH (GDSL esterase/lipase At5g14450 OS=Arabidopsis thaliana GN=At5g14450 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 50/123 (40.65%), Postives = 69/123 (56.10%), Query Frame = 2
Query:   80 PAIVSFGDSSVDVGNNNHLLTYFKANYPPYGREFIDHQPTGRFSDGKLVTDFTADTLGFKTYAPAYLSSQATGKNLLIGANFASAGSGY-DGNTSIINHAI---SLTHQLQYYREYQSKLAKL 436
            PAI +FGDS+ D G    +   F+    PYG+ F  H+PTGR SDG+L  DF A+ LG   Y  AYL+S   G N   GANFA+ GS     N +I  + I   SL  Q+  + +++++ A L
Sbjct:   40 PAIYNFGDSNSDTGG---ISAAFEPIRDPYGQGFF-HRPTGRDSDGRLTIDFIAERLGL-PYLSAYLNS--LGSNFRHGANFATGGSTIRRQNETIFQYGISPFSLDMQIAQFDQFKARSALL 155          
BLAST of CX047004 vs. ExPASy Swiss-Prot
Match: GDL51_ARATH (GDSL esterase/lipase At3g14220 OS=Arabidopsis thaliana GN=At3g14220 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 55/182 (30.22%), Postives = 85/182 (46.70%), Query Frame = 2
Query:    2 RKTVVFLVLAFAFASKGYAQEAAPLVPAIVSFGDSSVDVGNNNHLLTYF-KANYPPYGREFIDHQPTGRFSDGKLVTDFTADTLGFKTYAPAYLSSQATGKNLLIGANFASAGS---GYDGNTSIINHAISLTHQLQYYREYQSKLAKLAGRKQSASIIKDAIYIVGTGSGDFLQNYYAKPS 535
            R  V FL +  +F    +    +   P + +FGDSS DVGN     + F  A   PYG    D  P+GR+SDG +V DF    +G +   P  L  +A   +L  GA+FA AG+   G    T+ +N    ++  L+ ++++  K               +AIY+V  G+ D+L    A P+
Sbjct:    5 RNLVFFLGVLASFTLSSFPVTVSGEPPILFTFGDSSYDVGNTKFFSSEFDPATTWPYGDSIDD--PSGRWSDGHIVPDFVGRLIGHREPIPPVLDPKA---DLSRGASFAIAGAVVLGSQSTTASMNFGQQISKFLELHKQWTDKER------------AEAIYMVNIGAEDYLNFAKAHPN 169          
BLAST of CX047004 vs. ExPASy Swiss-Prot
Match: GDL8_ARATH (GDSL esterase/lipase At1g28590 OS=Arabidopsis thaliana GN=At1g28590 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 57/156 (36.54%), Postives = 76/156 (48.72%), Query Frame = 2
Query:   83 AIVSFGDSSVDVGNNNHLLTYFKAN------YPPYGREFIDHQPTGRFSDGKLVTDFTADTLGFKTYAPAYLSSQATGKNLLIGANFASAGS--------GYDGNTSIINHAISLTHQLQYYREYQSKLAKLAGRKQSA-SIIKDAIYIVGTGSGD 505
            +I+SFGDS  D GN   LL     N      +PPYG  F  H PTGR+SDG+L+ DF A+ LGF    P Y    A  K    G NFA AG+           G  S I + +SL+ QL   R +   L  L G       +I++A+ ++G   G+
Sbjct:   36 SIISFGDSIADTGN---LLGLSDPNDLPASAFPPYGETFF-HHPTGRYSDGRLIIDFIAEFLGFPLVPPFYGCQNANFKK---GVNFAVAGATALEPSFLEERGIHSTITN-VSLSVQL---RSFTESLPNLCGSPSDCRDMIENALILMGEIGGN 180          
BLAST of CX047004 vs. ExPASy Swiss-Prot
Match: GDL11_ARATH (GDSL esterase/lipase At1g28650 OS=Arabidopsis thaliana GN=At1g28650 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.294e-11
Identity = 52/163 (31.90%), Postives = 79/163 (48.47%), Query Frame = 2
Query:   83 AIVSFGDSSVDVGNNNHLLTYF---KANYPPYGREFIDHQPTGRFSDGKLVTDFTADTLGFKTYAPAYLSSQATGKNLLIGANFASAGSGYDGNTSIINHA-------ISLTHQLQYYREYQSKLAKLAGRKQSASIIKDAIYIVG-TGSGDFLQNYYAKPSL 538
            +I+SFGDS  D GN  HL       +A + PYG  F  H P+GR+SDG+LV DF A+ LG   Y P Y  SQ    N   G NFA  G+       ++          ISL+ QL  +++    L   +  +    ++ D++ ++G  G  D+   ++   S+
Sbjct:   37 SIISFGDSIADTGNYVHLSNVNNLPQAAFLPYGESFF-HPPSGRYSDGRLVIDFIAEFLGL-PYVPPYFGSQNVSFNQ--GINFAVYGATALDRAFLVKQGIKSDFTNISLSVQLNTFKQILPNLC-ASSTRDCREMLGDSLILMGEIGGNDYNYPFFEGKSI 194          
BLAST of CX047004 vs. ExPASy Swiss-Prot
Match: GDL16_ARATH (GDSL esterase/lipase At1g31550 OS=Arabidopsis thaliana GN=At1g31550 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 58/173 (33.53%), Postives = 81/173 (46.82%), Query Frame = 2
Query:   20 LVLAFAFASKGYAQEAAPLVPAIVSFGDSSVDVGNNNHLLTYFK---ANYPPYGREFIDHQPTGRFSDGKLVTDFTADTLGFKTYAPAYLSSQATGKNLLIGANFASA------GSGYDGNTSIINHAISLTHQLQYYREYQSKLAKLAGRKQSASIIKDAIYIVG-TGSGDF 508
            L L+  F S   ++       +I+SFGDS  D GN   L  +     + +PPYG  F  H PTGRFSDG+L+ DF A+ LG   Y P Y  S  T  N   G NFA A       S  +       H  SL  QL+ +++    L  L        +I +A+ ++G  G+ D+
Sbjct:   15 LFLSTLFVSIVSSESQCRNFESIISFGDSIADTGNLLGLSDHNNLPMSAFPPYGETFF-HHPTGRFSDGRLIIDFIAEFLGL-PYVPPYFGS--TNGNFEKGVNFAVASATALESSFLEEKGYHCPHNFSLGVQLKIFKQSLPNLCGLP--SDCRDMIGNALILMGEIGANDY 181          
BLAST of CX047004 vs. ExPASy Swiss-Prot
Match: FUCO3_ARATH (Alpha-L-fucosidase 3 OS=Arabidopsis thaliana GN=FXG1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 55/165 (33.33%), Postives = 76/165 (46.06%), Query Frame = 2
Query:   80 PAIVSFGDSSVDVGNNNHLLTYFKANYPPYGREFIDHQPTGRFSDGKLVTDFTADTLGFKTYAPAYLSSQATGKNLLIGANFASAGSGYDGNTSIINHA----ISLTHQLQYYREYQSKLAKLAGR--------KQSASIIKDAIYIVGTGSGDFLQNYYAKPSL 538
            PAI +FGDS+ D G    L   F    PP+G  F    P GR+ DG+LV DF A++LG   Y  A+L S   G N   GANFA+AGS      S +  +     SL  Q   +  + ++   +  R         +S S  K A+Y    G  D    Y+A  ++
Sbjct:   29 PAIFNFGDSNSDTGG---LSAAFGQAGPPHGSSFFG-SPAGRYCDGRLVIDFIAESLGL-PYLSAFLDS--VGSNFSHGANFATAGSPIRALNSTLRQSGFSPFSLDVQFVQFYNFHNRSQTVRSRGGVYKTMLPESDSFSK-ALYTFDIGQNDLTAGYFANKTV 185          
BLAST of CX047004 vs. ExPASy Swiss-Prot
Match: GDL40_ARATH (GDSL esterase/lipase At2g27360 OS=Arabidopsis thaliana GN=At2g27360 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.388e-11
Identity = 54/156 (34.62%), Postives = 73/156 (46.79%), Query Frame = 2
Query:   83 AIVSFGDSSVDVGNNNHLLTYFKAN------YPPYGREFIDHQPTGRFSDGKLVTDFTADTLGFKTYAPAYLSSQATGKNLLIGANFASAGSG-------YDGNTSIINHAISLTHQLQYYREYQSKLAKLAGRK--QSASIIKDAIYIVGTGSGD 505
            +I+SFGDS  D GN   LL     N      +PPYG  F  H P+GRFSDG+L+ DF A+ LG     P Y S      N   G NFA  G+         +  T      ISL +QL+ ++E    L  L G        +I++A  ++G   G+
Sbjct:   33 SIISFGDSITDTGN---LLGLSSPNDLPESAFPPYGETFF-HHPSGRFSDGRLIIDFIAEFLGIPHVPPFYGSKNG---NFEKGVNFAVGGATALECSVLEEKGTHCSQSNISLGNQLKSFKE---SLPYLCGSSSPDCRDMIENAFILIGEIGGN 178          
The following BLAST results are available for this feature:
BLAST of CX047004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
GDL76_ARATH7.587e-1240.65GDSL esterase/lipase At5g14450 OS=Arabidopsis thal... [more]
GDL51_ARATH7.587e-1230.22GDSL esterase/lipase At3g14220 OS=Arabidopsis thal... [more]
GDL8_ARATH9.909e-1236.54GDSL esterase/lipase At1g28590 OS=Arabidopsis thal... [more]
GDL11_ARATH1.294e-1131.90GDSL esterase/lipase At1g28650 OS=Arabidopsis thal... [more]
GDL16_ARATH1.690e-1133.53GDSL esterase/lipase At1g31550 OS=Arabidopsis thal... [more]
FUCO3_ARATH1.690e-1133.33Alpha-L-fucosidase 3 OS=Arabidopsis thaliana GN=FX... [more]
GDL40_ARATH8.388e-1134.62GDSL esterase/lipase At2g27360 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11E10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11E10-J20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047004 ID=CX047004; Name=CX047004; organism=Citrus sinensis; type=EST; length=538bp
CAGGAAAACAGTTGTGTTTTTGGTGCTGGCATTTGCATTTGCAAGCAAAG
GGTACGCACAAGAGGCAGCGCCTCTTGTTCCTGCAATCGTAAGTTTTGGT
GATTCTTCAGTAGATGTTGGCAACAACAATCATCTTCTCACCTATTTCAA
GGCCAATTACCCTCCTTATGGAAGAGAGTTTATCGATCATCAACCTACTG
GAAGATTTTCCGATGGGAAATTAGTCACTGACTTCACTGCTGATACCCTA
GGCTTTAAGACTTATGCGCCTGCATATCTTAGCTCACAAGCTACAGGGAA
AAACCTCCTTATTGGGGCCAACTTTGCTTCAGCTGGATCTGGTTATGATG
GCAATACATCCATCATAAACCATGCAATTTCATTGACTCACCAATTGCAG
TACTATAGAGAGTACCAGAGTAAGCTAGCAAAGTTAGCGGGTCGCAAACA
ATCGGCTTCCATAATCAAGGATGCAATATACATAGTGGGGACTGGGAGTG
GTGACTTTCTTCAAAATTACTATGCCAAACCATCGCTT
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