CX046964

Overview
NameCX046964
Unique NameCX046964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_ACOAM (50S ribosomal protein L16, chloroplastic OS=Acorus americanus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.417e-37
Identity = 76/98 (77.55%), Postives = 81/98 (82.65%), Query Frame = -1
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EP+WITSRQIEAGRRAM R  RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWV+VVKPGRILYEM GV+E            KMPIRTQFII+G
Sbjct:   38 EPSWITSRQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPAETRMGSGKGSPEYWVSVVKPGRILYEMGGVSETVARAAIEIAASKMPIRTQFIIAG 135          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_ANGEV (50S ribosomal protein L14, chloroplastic OS=Angiopteris evecta GN=rpl14 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.417e-37
Identity = 73/95 (76.84%), Postives = 88/95 (92.63%), Query Frame = -1
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQ++LNVADNSGAR+LMCIR++G S+R YA  GDVIVAV+KEAVPN PL++SEV+RAV+VRTCKEL+RDNGM IR+DDNAAVVI+ EGNP+G
Sbjct:    1 MIQPQSYLNVADNSGARKLMCIRVLGTSDREYADTGDVIVAVVKEAVPNMPLKKSEVVRAVVVRTCKELKRDNGMRIRFDDNAAVVINQEGNPRG 95          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_CUSEX (50S ribosomal protein L16, plastid OS=Cuscuta exaltata GN=rpl16 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.417e-37
Identity = 76/97 (78.35%), Postives = 79/97 (81.44%), Query Frame = -1
Query:  419 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIIS 709
            EPAW+TSRQIEAGRRAM RN RRGGKIWVRIFPDKPVT+RP ETRMGSGKG PEYWVAVVKPGRILYEM GV +            KMPIRTQFIIS
Sbjct:   38 EPAWLTSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGCPEYWVAVVKPGRILYEMGGVTKKIARRAFSIAASKMPIRTQFIIS 134          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_CALFG (50S ribosomal protein L16, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.417e-37
Identity = 76/97 (78.35%), Postives = 81/97 (83.51%), Query Frame = -1
Query:  419 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIIS 709
            EP+WITSRQIEAGRRAM R  RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWV+VVKPGRILYEM GV+E            KMPIRTQFII+
Sbjct:   38 EPSWITSRQIEAGRRAMTRYARRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVSVVKPGRILYEMGGVSETVARAAISIAACKMPIRTQFIIA 134          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_ZYGCR (50S ribosomal protein L14, chloroplastic OS=Zygnema circumcarinatum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.417e-37
Identity = 69/95 (72.63%), Postives = 90/95 (94.74%), Query Frame = -1
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQ++LNVADNSGAR+LMCIR++G+SNR+YAHIGD+++AV+KE VPN PL++SE++RAVIVRT K L+RDNGM++R+DDNAAVVI+ EGNP+G
Sbjct:    1 MIQPQSYLNVADNSGARKLMCIRVLGSSNRKYAHIGDMVIAVVKETVPNMPLKKSEIVRAVIVRTRKGLKRDNGMVLRFDDNAAVVINQEGNPRG 95          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_PIPCE (50S ribosomal protein L16, chloroplastic OS=Piper cenocladum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.123e-37
Identity = 74/98 (75.51%), Postives = 81/98 (82.65%), Query Frame = -1
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM R  RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWV+VVKPGRILYE+ G++E            KMPIRTQF+I+G
Sbjct:   38 EPAWITSRQIEAGRRAMARYARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVSVVKPGRILYEIGGISETVARAAISIAASKMPIRTQFVIAG 135          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_NANDO (50S ribosomal protein L16, chloroplastic OS=Nandina domestica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.123e-37
Identity = 74/98 (75.51%), Postives = 82/98 (83.67%), Query Frame = -1
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGR++M R  RRGGKIW+RIFPDKPVT+RPTETRMGSGKGSPEYWV+VVKPGRILYEM GV+E            KMPIRTQF+I+G
Sbjct:   38 EPAWITSRQIEAGRKSMARYARRGGKIWIRIFPDKPVTVRPTETRMGSGKGSPEYWVSVVKPGRILYEMGGVSEIAAREAISIAASKMPIRTQFVIAG 135          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_SORBI (50S ribosomal protein L16, chloroplastic OS=Sorghum bicolor GN=rpl16 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.385e-37
Identity = 75/95 (78.95%), Postives = 80/95 (84.21%), Query Frame = -1
Query:  425 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFI 709
            EPAWIT+RQIEAGRRAM R  RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGV+E            KMPIR+QF+
Sbjct:   38 EPAWITARQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVSETVARAAISIAASKMPIRSQFL 132          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_SACOF (50S ribosomal protein L16, chloroplastic OS=Saccharum officinarum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.385e-37
Identity = 75/95 (78.95%), Postives = 80/95 (84.21%), Query Frame = -1
Query:  425 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFI 709
            EPAWIT+RQIEAGRRAM R  RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGV+E            KMPIR+QF+
Sbjct:   38 EPAWITARQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVSETVARAAISIAASKMPIRSQFL 132          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_SACHY (50S ribosomal protein L16, chloroplastic OS=Saccharum hybrid GN=rpl16 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.385e-37
Identity = 75/95 (78.95%), Postives = 80/95 (84.21%), Query Frame = -1
Query:  425 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFI 709
            EPAWIT+RQIEAGRRAM R  RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGV+E            KMPIR+QF+
Sbjct:   38 EPAWITARQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVSETVARAAISIAASKMPIRSQFL 132          
The following BLAST results are available for this feature:
BLAST of CX046964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK16_ACOAM1.417e-3777.5550S ribosomal protein L16, chloroplastic OS=Acorus... [more]
RK14_ANGEV1.417e-3776.8450S ribosomal protein L14, chloroplastic OS=Angiop... [more]
RK16_CUSEX2.417e-3778.3550S ribosomal protein L16, plastid OS=Cuscuta exal... [more]
RK16_CALFG2.417e-3778.3550S ribosomal protein L16, chloroplastic OS=Calyca... [more]
RK14_ZYGCR2.417e-3772.6350S ribosomal protein L14, chloroplastic OS=Zygnem... [more]
RK16_PIPCE4.123e-3775.5150S ribosomal protein L16, chloroplastic OS=Piper ... [more]
RK16_NANDO4.123e-3775.5150S ribosomal protein L16, chloroplastic OS=Nandin... [more]
RK16_SORBI5.385e-3778.9550S ribosomal protein L16, chloroplastic OS=Sorghu... [more]
RK16_SACOF5.385e-3778.9550S ribosomal protein L16, chloroplastic OS=Saccha... [more]
RK16_SACHY5.385e-3778.9550S ribosomal protein L16, chloroplastic OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C08-F16-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046964 ID=CX046964; Name=CX046964; organism=Citrus sinensis; type=EST; length=709bp
TTCCCTTTGGATTTCCTTCGTGATCAATGACAACTGCAGCATTGTCATCG
TACCGTATTATCATACCGTTATCACGTCTGAGTTCTTTACAAGTACGTAC
AATTACAGCTCTGATCACTTCTGATCTTTCTAGAGGCGTATTGGGTACTG
CTTCCTTGATCACAGCAACAATAACGTCACCAATATGAGCATATCTACGA
TTACTGGCTCCTATGATTCGAATACACATCAATTCTCGGGCACCGCTATT
GTCTGCTACATTCAAATGGGTTTGAGGTTGAATCATATCGTTTTTTGAGT
CCGTTTTTTTAATGTTTAATTTAAAGTAAAGCACTGAAAGGACGAAGTAA
AAAAAAAAAGGGAAGACCCGCATTTTTTATACCCAAGATTTATTTCCTTT
GTTTCGACATTCCTATCCCGAAATAATGAATTGAGTTCTTATAGGCATTT
TGGACGCCGCTATTGAAATAGCCTTTCGAGCTATATTTTCAGCTACTCCA
CTCATTTCATAAAGTATTCTACCCGGTTTAACGACGGCTACCCAATATTC
GGGGGATCCTTTACCGGACCCCATACGGGTTTCCGTGGGTCTTAGTGTAA
CGGGTTTGTCTGGAAAGATACGTACCCATATTTTTCCCCCGCGCCGTACA
TTTCGTGGCATTGCCCGGCGCCCCGCTTCGATTTGTCTAGATGTGATCCA
AGCGGGTTC
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