CX046964

Overview
NameCX046964
Unique NameCX046964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_GOSHI (50S ribosomal protein L14, chloroplastic OS=Gossypium hirsutum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.412e-45
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIR+IGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRT KEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRVIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTRKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_GOSBA (50S ribosomal protein L14, chloroplastic OS=Gossypium barbadense GN=rpl14 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.412e-45
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIR+IGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRT KEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRVIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTRKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_CERDE (50S ribosomal protein L14, chloroplastic OS=Ceratophyllum demersum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.150e-45
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRI+GASN RYAHIGDVIVAVIKEAVPN PLERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRILGASNHRYAHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_VITVI (50S ribosomal protein L14, chloroplastic OS=Vitis vinifera GN=rpl14 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.114e-45
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRIIG SNRRYAHIGDVIVAVIKE VPN PLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAV+ID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRIIGTSNRRYAHIGDVIVAVIKEVVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_GUIAB (50S ribosomal protein L14, chloroplastic OS=Guizotia abyssinica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.114e-45
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRIIGAS+RRYAHIGDVIVAVIK+AVPN PLERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRIIGASHRRYAHIGDVIVAVIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_OLIPU (50S ribosomal protein L14, chloroplastic OS=Olimarabidopsis pumila GN=rpl14 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.164e-45
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT+LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEA+PNTPLERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_NASOF (50S ribosomal protein L14, chloroplastic OS=Nasturtium officinale GN=rpl14 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.164e-45
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT+LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEA+PNTPLERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_LOBMA (50S ribosomal protein L14, chloroplastic OS=Lobularia maritima GN=rpl14 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.164e-45
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT+LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEA+PNTPLERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_LEPVR (50S ribosomal protein L14, chloroplastic OS=Lepidium virginicum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.164e-45
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT+LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEA+PNTPLERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_CRUWA (50S ribosomal protein L14, chloroplastic OS=Crucihimalaya wallichii GN=rpl14 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.164e-45
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT+LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEA+PNTPLERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKG 95
The following BLAST results are available for this feature:
BLAST of CX046964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_GOSHI2.412e-4595.7950S ribosomal protein L14, chloroplastic OS=Gossyp... [more]
RK14_GOSBA2.412e-4595.7950S ribosomal protein L14, chloroplastic OS=Gossyp... [more]
RK14_CERDE3.150e-4593.6850S ribosomal protein L14, chloroplastic OS=Cerato... [more]
RK14_VITVI4.114e-4593.6850S ribosomal protein L14, chloroplastic OS=Vitis ... [more]
RK14_GUIAB4.114e-4593.6850S ribosomal protein L14, chloroplastic OS=Guizot... [more]
RK14_OLIPU9.164e-4593.6850S ribosomal protein L14, chloroplastic OS=Olimar... [more]
RK14_NASOF9.164e-4593.6850S ribosomal protein L14, chloroplastic OS=Nastur... [more]
RK14_LOBMA9.164e-4593.6850S ribosomal protein L14, chloroplastic OS=Lobula... [more]
RK14_LEPVR9.164e-4593.6850S ribosomal protein L14, chloroplastic OS=Lepidi... [more]
RK14_CRUWA9.164e-4593.6850S ribosomal protein L14, chloroplastic OS=Crucih... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C08-F16-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046964 ID=CX046964; Name=CX046964; organism=Citrus sinensis; type=EST; length=709bp
TTCCCTTTGGATTTCCTTCGTGATCAATGACAACTGCAGCATTGTCATCG
TACCGTATTATCATACCGTTATCACGTCTGAGTTCTTTACAAGTACGTAC
AATTACAGCTCTGATCACTTCTGATCTTTCTAGAGGCGTATTGGGTACTG
CTTCCTTGATCACAGCAACAATAACGTCACCAATATGAGCATATCTACGA
TTACTGGCTCCTATGATTCGAATACACATCAATTCTCGGGCACCGCTATT
GTCTGCTACATTCAAATGGGTTTGAGGTTGAATCATATCGTTTTTTGAGT
CCGTTTTTTTAATGTTTAATTTAAAGTAAAGCACTGAAAGGACGAAGTAA
AAAAAAAAAGGGAAGACCCGCATTTTTTATACCCAAGATTTATTTCCTTT
GTTTCGACATTCCTATCCCGAAATAATGAATTGAGTTCTTATAGGCATTT
TGGACGCCGCTATTGAAATAGCCTTTCGAGCTATATTTTCAGCTACTCCA
CTCATTTCATAAAGTATTCTACCCGGTTTAACGACGGCTACCCAATATTC
GGGGGATCCTTTACCGGACCCCATACGGGTTTCCGTGGGTCTTAGTGTAA
CGGGTTTGTCTGGAAAGATACGTACCCATATTTTTCCCCCGCGCCGTACA
TTTCGTGGCATTGCCCGGCGCCCCGCTTCGATTTGTCTAGATGTGATCCA
AGCGGGTTC
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