CX046964

Overview
NameCX046964
Unique NameCX046964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_CHLSC (50S ribosomal protein L14, chloroplastic OS=Chloranthus spicatus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.164e-45
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQP+THLNVADNSGARELMCIRIIGASN RYAHIGDVIVAVIKEAVPN PLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNP+G
Sbjct:    1 MIQPKTHLNVADNSGARELMCIRIIGASNHRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPRG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_BARVE (50S ribosomal protein L14, chloroplastic OS=Barbarea verna GN=rpl14 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.164e-45
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT+LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEA+PNTPLERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_ARATH (50S ribosomal protein L14, chloroplastic OS=Arabidopsis thaliana GN=rpl14 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.164e-45
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT+LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEA+PNTPLERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_AETGR (50S ribosomal protein L14, chloroplastic OS=Aethionema grandiflora GN=rpl14 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.164e-45
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT+LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEA+PNTPLERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_AETCO (50S ribosomal protein L14, chloroplastic OS=Aethionema cordifolium GN=rpl14 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.164e-45
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT+LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEA+PNTPLERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_CUCSA (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus GN=rpl14 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.197e-44
Identity = 90/95 (94.74%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+AVPNTPLERSEVIRAVIVRTCKEL+R+NGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_MANES (50S ribosomal protein L14, chloroplastic OS=Manihot esculenta GN=rpl14 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.563e-44
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQ QTHLNVADNSGARELMCIRIIG SNRRYAHIGDVIVAVIKEA PN+PLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQSQTHLNVADNSGARELMCIRIIGTSNRRYAHIGDVIVAVIKEAAPNSPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_DRANE (50S ribosomal protein L14, chloroplastic OS=Draba nemorosa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.666e-44
Identity = 88/95 (92.63%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT+LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEA+PN+PLERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNSPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_CAPBU (50S ribosomal protein L14, chloroplastic OS=Capsella bursa-pastoris GN=rpl14 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.666e-44
Identity = 88/95 (92.63%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT+LNVADNSGAR+LMCIRIIGASNRRYAHIGDVIVAVIKEA+PNTPLERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTYLNVADNSGARKLMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_ARAHI (50S ribosomal protein L14, chloroplastic OS=Arabis hirsuta GN=rpl14 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.666e-44
Identity = 88/95 (92.63%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT+LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEA+PN+PLERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNSPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKG 95
The following BLAST results are available for this feature:
BLAST of CX046964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_CHLSC9.164e-4593.6850S ribosomal protein L14, chloroplastic OS=Chlora... [more]
RK14_BARVE9.164e-4593.6850S ribosomal protein L14, chloroplastic OS=Barbar... [more]
RK14_ARATH9.164e-4593.6850S ribosomal protein L14, chloroplastic OS=Arabid... [more]
RK14_AETGR9.164e-4593.6850S ribosomal protein L14, chloroplastic OS=Aethio... [more]
RK14_AETCO9.164e-4593.6850S ribosomal protein L14, chloroplastic OS=Aethio... [more]
RK14_CUCSA1.197e-4494.7450S ribosomal protein L14, chloroplastic OS=Cucumi... [more]
RK14_MANES1.563e-4493.6850S ribosomal protein L14, chloroplastic OS=Maniho... [more]
RK14_DRANE2.666e-4492.6350S ribosomal protein L14, chloroplastic OS=Draba ... [more]
RK14_CAPBU2.666e-4492.6350S ribosomal protein L14, chloroplastic OS=Capsel... [more]
RK14_ARAHI2.666e-4492.6350S ribosomal protein L14, chloroplastic OS=Arabis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C08-F16-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046964 ID=CX046964; Name=CX046964; organism=Citrus sinensis; type=EST; length=709bp
TTCCCTTTGGATTTCCTTCGTGATCAATGACAACTGCAGCATTGTCATCG
TACCGTATTATCATACCGTTATCACGTCTGAGTTCTTTACAAGTACGTAC
AATTACAGCTCTGATCACTTCTGATCTTTCTAGAGGCGTATTGGGTACTG
CTTCCTTGATCACAGCAACAATAACGTCACCAATATGAGCATATCTACGA
TTACTGGCTCCTATGATTCGAATACACATCAATTCTCGGGCACCGCTATT
GTCTGCTACATTCAAATGGGTTTGAGGTTGAATCATATCGTTTTTTGAGT
CCGTTTTTTTAATGTTTAATTTAAAGTAAAGCACTGAAAGGACGAAGTAA
AAAAAAAAAGGGAAGACCCGCATTTTTTATACCCAAGATTTATTTCCTTT
GTTTCGACATTCCTATCCCGAAATAATGAATTGAGTTCTTATAGGCATTT
TGGACGCCGCTATTGAAATAGCCTTTCGAGCTATATTTTCAGCTACTCCA
CTCATTTCATAAAGTATTCTACCCGGTTTAACGACGGCTACCCAATATTC
GGGGGATCCTTTACCGGACCCCATACGGGTTTCCGTGGGTCTTAGTGTAA
CGGGTTTGTCTGGAAAGATACGTACCCATATTTTTCCCCCGCGCCGTACA
TTTCGTGGCATTGCCCGGCGCCCCGCTTCGATTTGTCTAGATGTGATCCA
AGCGGGTTC
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