CX046964

Overview
NameCX046964
Unique NameCX046964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_MORIN (50S ribosomal protein L14, chloroplastic OS=Morus indica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.482e-44
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGAR+LMCIRIIGASNRRYA IGDV+VAVIKEA+PNTPLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID E NPKG
Sbjct:    1 MIQPQTHLNVADNSGARKLMCIRIIGASNRRYAKIGDVVVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQERNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_CUSEX (50S ribosomal protein L14, plastid OS=Cuscuta exaltata GN=rpl14 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.482e-44
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGD+IVAVIKEAVPN PLERSE++RAVIVRT KEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDIIVAVIKEAVPNMPLERSELVRAVIVRTRKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_PANGI (50S ribosomal protein L14, chloroplastic OS=Panax ginseng GN=rpl14 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.548e-44
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPN PL RSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLARSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_DAUCA (50S ribosomal protein L14, chloroplastic OS=Daucus carota GN=rpl14 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.548e-44
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPN PL RSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLARSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_CUSRE (50S ribosomal protein L14, plastid OS=Cuscuta reflexa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.548e-44
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCI+IIGASNRRYAHIGD+IVAVIKEAVPN PLERSEV+RAVIVRT KEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIQIIGASNRRYAHIGDIIVAVIKEAVPNMPLERSEVVRAVIVRTRKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_LOTJA (50S ribosomal protein L14, chloroplastic OS=Lotus japonicus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.758e-44
Identity = 86/95 (90.53%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGAR+LMCIRIIGASNRRYA+IGD++VAVIKEAVPNTPLERSEVIRAVIVRTCKEL+R NG+II+YDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARKLMCIRIIGASNRRYAYIGDIVVAVIKEAVPNTPLERSEVIRAVIVRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_BUXMI (50S ribosomal protein L14, chloroplastic OS=Buxus microphylla GN=rpl14 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.758e-44
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT+LNVADNSGAR+LMCIRI+GASNRRYAHIGDVIVAVIKEAVPN PLERSEVIRAVIVRTCKEL R NGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTYLNVADNSGARKLMCIRIVGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELNRGNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_ACOCL (50S ribosomal protein L14, chloroplastic OS=Acorus calamus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.758e-44
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPN  LERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMSLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_POPAL (50S ribosomal protein L14, chloroplastic OS=Populus alba GN=rpl14 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.013e-43
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQ QTHLNVADNSGARELMCIRIIG SNRRYAHIGDVI+AVIKEAVPN+PLERSEVIRAVIVRT KEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQSQTHLNVADNSGARELMCIRIIGTSNRRYAHIGDVIIAVIKEAVPNSPLERSEVIRAVIVRTSKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_POPTR (50S ribosomal protein L14, chloroplastic OS=Populus trichocarpa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.323e-43
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQ QTHLNVADNSGARELMCIRIIG SNRRYAHIGD+I+AVIKEAVPN+PLERSEVIRAVIVRT KEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQSQTHLNVADNSGARELMCIRIIGTSNRRYAHIGDIIIAVIKEAVPNSPLERSEVIRAVIVRTSKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
The following BLAST results are available for this feature:
BLAST of CX046964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_MORIN3.482e-4492.6350S ribosomal protein L14, chloroplastic OS=Morus ... [more]
RK14_CUSEX3.482e-4492.6350S ribosomal protein L14, plastid OS=Cuscuta exal... [more]
RK14_PANGI4.548e-4493.6850S ribosomal protein L14, chloroplastic OS=Panax ... [more]
RK14_DAUCA4.548e-4493.6850S ribosomal protein L14, chloroplastic OS=Daucus... [more]
RK14_CUSRE4.548e-4492.6350S ribosomal protein L14, plastid OS=Cuscuta refl... [more]
RK14_LOTJA7.758e-4490.5350S ribosomal protein L14, chloroplastic OS=Lotus ... [more]
RK14_BUXMI7.758e-4492.6350S ribosomal protein L14, chloroplastic OS=Buxus ... [more]
RK14_ACOCL7.758e-4493.6850S ribosomal protein L14, chloroplastic OS=Acorus... [more]
RK14_POPAL1.013e-4392.6350S ribosomal protein L14, chloroplastic OS=Populu... [more]
RK14_POPTR1.323e-4391.5850S ribosomal protein L14, chloroplastic OS=Populu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C08-F16-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046964 ID=CX046964; Name=CX046964; organism=Citrus sinensis; type=EST; length=709bp
TTCCCTTTGGATTTCCTTCGTGATCAATGACAACTGCAGCATTGTCATCG
TACCGTATTATCATACCGTTATCACGTCTGAGTTCTTTACAAGTACGTAC
AATTACAGCTCTGATCACTTCTGATCTTTCTAGAGGCGTATTGGGTACTG
CTTCCTTGATCACAGCAACAATAACGTCACCAATATGAGCATATCTACGA
TTACTGGCTCCTATGATTCGAATACACATCAATTCTCGGGCACCGCTATT
GTCTGCTACATTCAAATGGGTTTGAGGTTGAATCATATCGTTTTTTGAGT
CCGTTTTTTTAATGTTTAATTTAAAGTAAAGCACTGAAAGGACGAAGTAA
AAAAAAAAAGGGAAGACCCGCATTTTTTATACCCAAGATTTATTTCCTTT
GTTTCGACATTCCTATCCCGAAATAATGAATTGAGTTCTTATAGGCATTT
TGGACGCCGCTATTGAAATAGCCTTTCGAGCTATATTTTCAGCTACTCCA
CTCATTTCATAAAGTATTCTACCCGGTTTAACGACGGCTACCCAATATTC
GGGGGATCCTTTACCGGACCCCATACGGGTTTCCGTGGGTCTTAGTGTAA
CGGGTTTGTCTGGAAAGATACGTACCCATATTTTTCCCCCGCGCCGTACA
TTTCGTGGCATTGCCCGGCGCCCCGCTTCGATTTGTCTAGATGTGATCCA
AGCGGGTTC
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