CX046964

Overview
NameCX046964
Unique NameCX046964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL16_FRASC (50S ribosomal protein L16 OS=Frankia sp. (strain CcI3) GN=rplP PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 53/96 (55.21%), Postives = 75/96 (78.12%), Query Frame = -1 
Query:  422 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFII 709
            E A++T+RQIE+ R AM R++RRGGK+W+ I+PD+P+T +P ETRMGSGKGSPE+WVA VKPGR+L+E+SGVAE            K+P++ +F++
Sbjct:   38 ESAYVTNRQIESARIAMTRHIRRGGKVWINIYPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVLFELSGVAEPVAREAMRRAIHKLPMKCRFVV 133
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL16_FRAAA (50S ribosomal protein L16 OS=Frankia alni (strain ACN14a) GN=rplP PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 53/96 (55.21%), Postives = 75/96 (78.12%), Query Frame = -1 
Query:  422 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFII 709
            E A++T+RQIE+ R AM R++RRGGK+W+ I+PD+P+T +P ETRMGSGKGSPE+WVA VKPGR+L+E+SGVAE            K+P++ +F++
Sbjct:   38 ESAYVTNRQIESARIAMTRHIRRGGKVWINIYPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVLFELSGVAEPVAREAMRRAIHKLPMKCRFVV 133
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL14_PROM4 (50S ribosomal protein L14 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplN PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 57/95 (60.00%), Postives = 79/95 (83.16%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQ +T L VADNSGA++L CIR++G SNRRYAH+GDVIVA +K+A+PN  +++S+V++AV+VRT   LRR+ G  IR+DDNAAV+I+ + NP+G
Sbjct:    1 MIQQETFLTVADNSGAKKLQCIRVLG-SNRRYAHVGDVIVAAVKDALPNMGVKKSDVVKAVVVRTKATLRRETGNSIRFDDNAAVLINEDKNPRG 94
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL14_NITSB (50S ribosomal protein L14 OS=Nitratiruptor sp. (strain SB155-2) GN=rplN PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 54/95 (56.84%), Postives = 79/95 (83.16%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQ  T LNVADNSGA+E+M I+++G S RRYA +GDVIVA +K+A+PN  +++ +V++AV+VRT KE++R+NG +IR+DDNAAV++D++  P G
Sbjct:    1 MIQSFTRLNVADNSGAKEIMAIKVLGGSKRRYASVGDVIVASVKKALPNGKVKKGQVVKAVVVRTKKEIQRENGSLIRFDDNAAVILDNKNEPIG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL14_CAMJR (50S ribosomal protein L14 OS=Campylobacter jejuni (strain RM1221) GN=rplN PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 56/95 (58.95%), Postives = 78/95 (82.11%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQ  T L VADNSGA+ELMCI+++G S RRYA +GDVIVA +K+A+PN  +++ +V++AVIVRT KE+ RDNG +IR+D+NAAV++D++  P G
Sbjct:    1 MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVKKALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL14_CAMJJ (50S ribosomal protein L14 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rplN PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 56/95 (58.95%), Postives = 78/95 (82.11%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQ  T L VADNSGA+ELMCI+++G S RRYA +GDVIVA +K+A+PN  +++ +V++AVIVRT KE+ RDNG +IR+D+NAAV++D++  P G
Sbjct:    1 MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVKKALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL14_CAMJE (50S ribosomal protein L14 OS=Campylobacter jejuni GN=rplN PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 56/95 (58.95%), Postives = 78/95 (82.11%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQ  T L VADNSGA+ELMCI+++G S RRYA +GDVIVA +K+A+PN  +++ +V++AVIVRT KE+ RDNG +IR+D+NAAV++D++  P G
Sbjct:    1 MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVKKALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL14_CAMJD (50S ribosomal protein L14 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rplN PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 56/95 (58.95%), Postives = 78/95 (82.11%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQ  T L VADNSGA+ELMCI+++G S RRYA +GDVIVA +K+A+PN  +++ +V++AVIVRT KE+ RDNG +IR+D+NAAV++D++  P G
Sbjct:    1 MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVKKALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL14_CAMJ8 (50S ribosomal protein L14 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rplN PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 56/95 (58.95%), Postives = 78/95 (82.11%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQ  T L VADNSGA+ELMCI+++G S RRYA +GDVIVA +K+A+PN  +++ +V++AVIVRT KE+ RDNG +IR+D+NAAV++D++  P G
Sbjct:    1 MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVKKALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_GUITH (50S ribosomal protein L16, chloroplastic OS=Guillardia theta GN=rpl16 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 52/95 (54.74%), Postives = 74/95 (77.89%), Query Frame = -1 
Query:  425 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFI 709
            EP W+TSRQIEA RR + R V+R G++W+R+FPDK ++ +P ETRMG+GKG+PEYWVAV+KPG IL+E++GV+++           K+PI+T+FI
Sbjct:   38 EPIWLTSRQIEATRRTITRQVKRVGRLWIRVFPDKSISAKPPETRMGAGKGAPEYWVAVIKPGHILFEINGVSQDLRYLAFKNASYKLPIKTKFI 132
The following BLAST results are available for this feature:
BLAST of CX046964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL16_FRASC6.598e-2755.2150S ribosomal protein L16 OS=Frankia sp. (strain C... [more]
RL16_FRAAA6.598e-2755.2150S ribosomal protein L16 OS=Frankia alni (strain ... [more]
RL14_PROM46.598e-2760.0050S ribosomal protein L14 OS=Prochlorococcus marin... [more]
RL14_NITSB6.598e-2756.8450S ribosomal protein L14 OS=Nitratiruptor sp. (st... [more]
RL14_CAMJR6.598e-2758.9550S ribosomal protein L14 OS=Campylobacter jejuni ... [more]
RL14_CAMJJ6.598e-2758.9550S ribosomal protein L14 OS=Campylobacter jejuni ... [more]
RL14_CAMJE6.598e-2758.9550S ribosomal protein L14 OS=Campylobacter jejuni ... [more]
RL14_CAMJD6.598e-2758.9550S ribosomal protein L14 OS=Campylobacter jejuni ... [more]
RL14_CAMJ86.598e-2758.9550S ribosomal protein L14 OS=Campylobacter jejuni ... [more]
RK16_GUITH6.598e-2754.7450S ribosomal protein L16, chloroplastic OS=Guilla... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C08-F16-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046964 ID=CX046964; Name=CX046964; organism=Citrus sinensis; type=EST; length=709bp
TTCCCTTTGGATTTCCTTCGTGATCAATGACAACTGCAGCATTGTCATCG
TACCGTATTATCATACCGTTATCACGTCTGAGTTCTTTACAAGTACGTAC
AATTACAGCTCTGATCACTTCTGATCTTTCTAGAGGCGTATTGGGTACTG
CTTCCTTGATCACAGCAACAATAACGTCACCAATATGAGCATATCTACGA
TTACTGGCTCCTATGATTCGAATACACATCAATTCTCGGGCACCGCTATT
GTCTGCTACATTCAAATGGGTTTGAGGTTGAATCATATCGTTTTTTGAGT
CCGTTTTTTTAATGTTTAATTTAAAGTAAAGCACTGAAAGGACGAAGTAA
AAAAAAAAAGGGAAGACCCGCATTTTTTATACCCAAGATTTATTTCCTTT
GTTTCGACATTCCTATCCCGAAATAATGAATTGAGTTCTTATAGGCATTT
TGGACGCCGCTATTGAAATAGCCTTTCGAGCTATATTTTCAGCTACTCCA
CTCATTTCATAAAGTATTCTACCCGGTTTAACGACGGCTACCCAATATTC
GGGGGATCCTTTACCGGACCCCATACGGGTTTCCGTGGGTCTTAGTGTAA
CGGGTTTGTCTGGAAAGATACGTACCCATATTTTTCCCCCGCGCCGTACA
TTTCGTGGCATTGCCCGGCGCCCCGCTTCGATTTGTCTAGATGTGATCCA
AGCGGGTTC
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