CX046964

Overview
NameCX046964
Unique NameCX046964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL16_DEHSC (50S ribosomal protein L16 OS=Dehalococcoides sp. (strain CBDB1) GN=rplP PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = -1
Query:  425 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFI 709
            E  WIT+RQIEA RRA+ R +RRGG++W+RIFPDKP+T +P ETR G GKG+PE WVAVV+ GRI++E+ GV              KMP++T+F+
Sbjct:   38 EAGWITARQIEATRRAITRYIRRGGQVWIRIFPDKPITKKPAETRQGGGKGAPEEWVAVVRRGRIMFEIGGVTPEAAKEAMRLASYKMPVKTRFV 132          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL16_DEHSB (50S ribosomal protein L16 OS=Dehalococcoides sp. (strain BAV1) GN=rplP PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = -1
Query:  425 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFI 709
            E  WIT+RQIEA RRA+ R +RRGG++W+RIFPDKP+T +P ETR G GKG+PE WVAVV+ GRI++E+ GV              KMP++T+F+
Sbjct:   38 EAGWITARQIEATRRAITRYIRRGGQVWIRIFPDKPITKKPAETRQGGGKGAPEEWVAVVRRGRIMFEIGGVTPEAAKEAMRLASYKMPVKTRFV 132          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL16_DEHE1 (50S ribosomal protein L16 OS=Dehalococcoides ethenogenes (strain 195) GN=rplP PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = -1
Query:  425 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFI 709
            E  WIT+RQIEA RRA+ R +RRGG++W+RIFPDKP+T +P ETR G GKG+PE WVAVV+ GRI++E+ GV              KMP++T+F+
Sbjct:   38 EAGWITARQIEATRRAITRYIRRGGQVWIRIFPDKPITKKPAETRQGGGKGAPEEWVAVVRRGRIMFEIGGVTPEAAKEAMRLASYKMPVKTRFV 132          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL16_BACSK (50S ribosomal protein L16 OS=Bacillus clausii (strain KSM-K16) GN=rplP PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = -1
Query:  425 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFI 709
            E +WIT+RQIEA R AM R ++RGGK+W++IFP KP T +P E RMGSGKG+PE WVAVVKPG+I++E+SGV+E            K+PI+ +F+
Sbjct:   38 EASWITNRQIEAARIAMTRYMKRGGKVWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPGKIMFEISGVSEEVAREALRLASHKLPIKCKFV 132          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL16_BACHK (50S ribosomal protein L16 OS=Bacillus thuringiensis subsp. konkukian GN=rplP PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 51/93 (54.84%), Postives = 71/93 (76.34%), Query Frame = -1
Query:  425 AWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFI 703
            +WIT+RQIEA RRAM R ++RGGK+W++IFP KP T +P E RMGSGKG+PE WVAVVKPG+I++E++GV+E            K+P++ +F+
Sbjct:   40 SWITNRQIEAARRAMTRYMKRGGKVWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPGKIMFEIAGVSEEVAREALRLAAHKLPVKCKFV 132          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL16_BACCZ (50S ribosomal protein L16 OS=Bacillus cereus (strain ZK / E33L) GN=rplP PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 51/93 (54.84%), Postives = 71/93 (76.34%), Query Frame = -1
Query:  425 AWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFI 703
            +WIT+RQIEA RRAM R ++RGGK+W++IFP KP T +P E RMGSGKG+PE WVAVVKPG+I++E++GV+E            K+P++ +F+
Sbjct:   40 SWITNRQIEAARRAMTRYMKRGGKVWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPGKIMFEIAGVSEEVAREALRLAAHKLPVKCKFV 132          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL16_BACCR (50S ribosomal protein L16 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplP PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 51/93 (54.84%), Postives = 71/93 (76.34%), Query Frame = -1
Query:  425 AWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFI 703
            +WIT+RQIEA RRAM R ++RGGK+W++IFP KP T +P E RMGSGKG+PE WVAVVKPG+I++E++GV+E            K+P++ +F+
Sbjct:   40 SWITNRQIEAARRAMTRYMKRGGKVWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPGKIMFEIAGVSEEVAREALRLAAHKLPVKCKFV 132          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL16_BACCQ (50S ribosomal protein L16 OS=Bacillus cereus (strain Q1) GN=rplP PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 51/93 (54.84%), Postives = 71/93 (76.34%), Query Frame = -1
Query:  425 AWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFI 703
            +WIT+RQIEA RRAM R ++RGGK+W++IFP KP T +P E RMGSGKG+PE WVAVVKPG+I++E++GV+E            K+P++ +F+
Sbjct:   40 SWITNRQIEAARRAMTRYMKRGGKVWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPGKIMFEIAGVSEEVAREALRLAAHKLPVKCKFV 132          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL16_BACC7 (50S ribosomal protein L16 OS=Bacillus cereus (strain AH187) GN=rplP PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 51/93 (54.84%), Postives = 71/93 (76.34%), Query Frame = -1
Query:  425 AWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFI 703
            +WIT+RQIEA RRAM R ++RGGK+W++IFP KP T +P E RMGSGKG+PE WVAVVKPG+I++E++GV+E            K+P++ +F+
Sbjct:   40 SWITNRQIEAARRAMTRYMKRGGKVWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPGKIMFEIAGVSEEVAREALRLAAHKLPVKCKFV 132          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RL16_BACC4 (50S ribosomal protein L16 OS=Bacillus cereus (strain B4264) GN=rplP PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 51/93 (54.84%), Postives = 71/93 (76.34%), Query Frame = -1
Query:  425 AWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFI 703
            +WIT+RQIEA RRAM R ++RGGK+W++IFP KP T +P E RMGSGKG+PE WVAVVKPG+I++E++GV+E            K+P++ +F+
Sbjct:   40 SWITNRQIEAARRAMTRYMKRGGKVWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPGKIMFEIAGVSEEVAREALRLAAHKLPVKCKFV 132          
The following BLAST results are available for this feature:
BLAST of CX046964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL16_DEHSC9.528e-2654.7450S ribosomal protein L16 OS=Dehalococcoides sp. (... [more]
RL16_DEHSB9.528e-2654.7450S ribosomal protein L16 OS=Dehalococcoides sp. (... [more]
RL16_DEHE19.528e-2654.7450S ribosomal protein L16 OS=Dehalococcoides ethen... [more]
RL16_BACSK9.528e-2655.7950S ribosomal protein L16 OS=Bacillus clausii (str... [more]
RL16_BACHK9.528e-2654.8450S ribosomal protein L16 OS=Bacillus thuringiensi... [more]
RL16_BACCZ9.528e-2654.8450S ribosomal protein L16 OS=Bacillus cereus (stra... [more]
RL16_BACCR9.528e-2654.8450S ribosomal protein L16 OS=Bacillus cereus (stra... [more]
RL16_BACCQ9.528e-2654.8450S ribosomal protein L16 OS=Bacillus cereus (stra... [more]
RL16_BACC79.528e-2654.8450S ribosomal protein L16 OS=Bacillus cereus (stra... [more]
RL16_BACC49.528e-2654.8450S ribosomal protein L16 OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C08-F16-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046964 ID=CX046964; Name=CX046964; organism=Citrus sinensis; type=EST; length=709bp
TTCCCTTTGGATTTCCTTCGTGATCAATGACAACTGCAGCATTGTCATCG
TACCGTATTATCATACCGTTATCACGTCTGAGTTCTTTACAAGTACGTAC
AATTACAGCTCTGATCACTTCTGATCTTTCTAGAGGCGTATTGGGTACTG
CTTCCTTGATCACAGCAACAATAACGTCACCAATATGAGCATATCTACGA
TTACTGGCTCCTATGATTCGAATACACATCAATTCTCGGGCACCGCTATT
GTCTGCTACATTCAAATGGGTTTGAGGTTGAATCATATCGTTTTTTGAGT
CCGTTTTTTTAATGTTTAATTTAAAGTAAAGCACTGAAAGGACGAAGTAA
AAAAAAAAAGGGAAGACCCGCATTTTTTATACCCAAGATTTATTTCCTTT
GTTTCGACATTCCTATCCCGAAATAATGAATTGAGTTCTTATAGGCATTT
TGGACGCCGCTATTGAAATAGCCTTTCGAGCTATATTTTCAGCTACTCCA
CTCATTTCATAAAGTATTCTACCCGGTTTAACGACGGCTACCCAATATTC
GGGGGATCCTTTACCGGACCCCATACGGGTTTCCGTGGGTCTTAGTGTAA
CGGGTTTGTCTGGAAAGATACGTACCCATATTTTTCCCCCGCGCCGTACA
TTTCGTGGCATTGCCCGGCGCCCCGCTTCGATTTGTCTAGATGTGATCCA
AGCGGGTTC
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