CX046964

Overview
NameCX046964
Unique NameCX046964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_NYMAL (50S ribosomal protein L14, chloroplastic OS=Nymphaea alba GN=rpl14 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.323e-43
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = -1
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT LNVADNSGAR+LMCIRIIGASN RYAHIGDVIVAVIKEAVPN PLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTLLNVADNSGARKLMCIRIIGASNYRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_PIPCE (50S ribosomal protein L14, chloroplastic OS=Piper cenocladum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.257e-43
Identity = 87/95 (91.58%), Postives = 92/95 (96.84%), Query Frame = -1
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQ QT+LNVADNSGARELMCIRI+GASNRRYA+IGD+IVAVIKEAVPN PLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQTQTYLNVADNSGARELMCIRILGASNRRYANIGDIIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_NANDO (50S ribosomal protein L14, chloroplastic OS=Nandina domestica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 87/95 (91.58%), Postives = 92/95 (96.84%), Query Frame = -1
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVP+ PL+RSEVIRAVIVRT KEL+RDNGMII+YDDNAAVVID EGNP+G
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPHMPLQRSEVIRAVIVRTRKELKRDNGMIIQYDDNAAVVIDQEGNPRG 95          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_AMBTC (50S ribosomal protein L14, chloroplastic OS=Amborella trichopoda GN=rpl14 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = -1
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQ QT+LNVADNSGARELMCIRI+GASN RYAHIGDVIVAVIKEAVPN PLERSEVIRAVIVRTCKEL+RDNG+IIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQAQTYLNVADNSGARELMCIRIVGASNPRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGIIIRYDDNAAVVIDPEGNPKG 95          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_FAGEA (50S ribosomal protein L14, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl14 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.578e-43
Identity = 85/95 (89.47%), Postives = 92/95 (96.84%), Query Frame = -1
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT+LNVADNSGARELMCIRIIGASNRRYAHIGD+IVAVIKEA+PN PLERSEVIRAVIVRT KEL+R+NGMIIRYDDNAAV+ID +GNPKG
Sbjct:    1 MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDIIVAVIKEAIPNMPLERSEVIRAVIVRTRKELKRENGMIIRYDDNAAVIIDQKGNPKG 95          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_CICAR (50S ribosomal protein L14, chloroplastic OS=Cicer arietinum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.578e-43
Identity = 85/95 (89.47%), Postives = 92/95 (96.84%), Query Frame = -1
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT+LNVADNSGARELMCIRIIGASNRRYA+IGD+IVAVIK+AVPNTP ERSEVIRAVIVRTCKEL+R NG+II+YDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTYLNVADNSGARELMCIRIIGASNRRYAYIGDIIVAVIKKAVPNTPFERSEVIRAVIVRTCKELKRSNGIIIKYDDNAAVVIDKEGNPKG 95          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_SOYBN (50S ribosomal protein L14, chloroplastic OS=Glycine max GN=rpl14 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.120e-42
Identity = 84/95 (88.42%), Postives = 92/95 (96.84%), Query Frame = -1
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRI+GASNRRYA+IGD++VAVIK+AVPNT LERSEVIRAVIVRTCKEL+R NG+II+YDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRILGASNRRYAYIGDIVVAVIKQAVPNTNLERSEVIRAVIVRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKG 95          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_DIOEL (50S ribosomal protein L14, chloroplastic OS=Dioscorea elephantipes GN=rpl14 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.463e-42
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = -1
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT LNVADNSGARELMCIRIIGA N RYAHIGDVIVAVIKEAVPN PLERSEVIRAVIVRTCKEL+R+NG+IIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTLLNVADNSGARELMCIRIIGAGNPRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRNNGIIIRYDDNAAVVIDQEGNPKG 95          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_CITSI (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis GN=rpl16 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.496e-42
Identity = 86/98 (87.76%), Postives = 86/98 (87.76%), Query Frame = -1
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAEN           KMPIRTQFIISG
Sbjct:   39 EPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFIISG 136          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_JASNU (50S ribosomal protein L14, chloroplastic OS=Jasminum nudiflorum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.257e-42
Identity = 84/95 (88.42%), Postives = 91/95 (95.79%), Query Frame = -1
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGAR+LMCIRIIGASNRRYAHIGDVIVAVIKEAVP+  LE+SEV+RAVIVRTCKEL+RD GMIIRYDDNAA+VID +GNPKG
Sbjct:    1 MIQPQTHLNVADNSGARKLMCIRIIGASNRRYAHIGDVIVAVIKEAVPHMSLEKSEVVRAVIVRTCKELKRDCGMIIRYDDNAAIVIDQKGNPKG 95          
The following BLAST results are available for this feature:
BLAST of CX046964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_NYMAL1.323e-4393.6850S ribosomal protein L14, chloroplastic OS=Nympha... [more]
RK14_PIPCE2.257e-4391.5850S ribosomal protein L14, chloroplastic OS=Piper ... [more]
RK14_NANDO5.029e-4391.5850S ribosomal protein L14, chloroplastic OS=Nandin... [more]
RK14_AMBTC6.568e-4391.5850S ribosomal protein L14, chloroplastic OS=Ambore... [more]
RK14_FAGEA8.578e-4389.4750S ribosomal protein L14, chloroplastic OS=Fagopy... [more]
RK14_CICAR8.578e-4389.4750S ribosomal protein L14, chloroplastic OS=Cicer ... [more]
RK14_SOYBN1.120e-4288.4250S ribosomal protein L14, chloroplastic OS=Glycin... [more]
RK14_DIOEL1.463e-4291.5850S ribosomal protein L14, chloroplastic OS=Diosco... [more]
RK16_CITSI2.496e-4287.7650S ribosomal protein L16, chloroplastic OS=Citrus... [more]
RK14_JASNU4.257e-4288.4250S ribosomal protein L14, chloroplastic OS=Jasmin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C08-F16-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046964 ID=CX046964; Name=CX046964; organism=Citrus sinensis; type=EST; length=709bp
TTCCCTTTGGATTTCCTTCGTGATCAATGACAACTGCAGCATTGTCATCG
TACCGTATTATCATACCGTTATCACGTCTGAGTTCTTTACAAGTACGTAC
AATTACAGCTCTGATCACTTCTGATCTTTCTAGAGGCGTATTGGGTACTG
CTTCCTTGATCACAGCAACAATAACGTCACCAATATGAGCATATCTACGA
TTACTGGCTCCTATGATTCGAATACACATCAATTCTCGGGCACCGCTATT
GTCTGCTACATTCAAATGGGTTTGAGGTTGAATCATATCGTTTTTTGAGT
CCGTTTTTTTAATGTTTAATTTAAAGTAAAGCACTGAAAGGACGAAGTAA
AAAAAAAAAGGGAAGACCCGCATTTTTTATACCCAAGATTTATTTCCTTT
GTTTCGACATTCCTATCCCGAAATAATGAATTGAGTTCTTATAGGCATTT
TGGACGCCGCTATTGAAATAGCCTTTCGAGCTATATTTTCAGCTACTCCA
CTCATTTCATAAAGTATTCTACCCGGTTTAACGACGGCTACCCAATATTC
GGGGGATCCTTTACCGGACCCCATACGGGTTTCCGTGGGTCTTAGTGTAA
CGGGTTTGTCTGGAAAGATACGTACCCATATTTTTCCCCCGCGCCGTACA
TTTCGTGGCATTGCCCGGCGCCCCGCTTCGATTTGTCTAGATGTGATCCA
AGCGGGTTC
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