CX046964

Overview
NameCX046964
Unique NameCX046964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_EUCGG (50S ribosomal protein L16, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.618e-41
Identity = 84/98 (85.71%), Postives = 85/98 (86.73%), Query Frame = -1
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAEN           KMPIRTQFIISG
Sbjct:   38 EPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFIISG 135          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_MANES (50S ribosomal protein L16, chloroplastic OS=Manihot esculenta GN=rpl16 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.113e-41
Identity = 84/98 (85.71%), Postives = 84/98 (85.71%), Query Frame = -1
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAEN           KMPIRTQFIISG
Sbjct:   38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFIISG 135          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_CARPA (50S ribosomal protein L16, chloroplastic OS=Carica papaya GN=rpl16 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.113e-41
Identity = 83/98 (84.69%), Postives = 85/98 (86.73%), Query Frame = -1
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EP WITSRQIEAGRRAM RN+RRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAEN           KMPI+TQFIISG
Sbjct:   38 EPTWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARRAISIAASKMPIKTQFIISG 135          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_CUCSA (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.759e-41
Identity = 84/98 (85.71%), Postives = 84/98 (85.71%), Query Frame = -1
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAEN           KMPIRTQFI SG
Sbjct:   38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 135          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_LEMMI (50S ribosomal protein L14, chloroplastic OS=Lemna minor GN=rpl14 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.604e-41
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = -1
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQT LNVADNSGARELMCIRI+GASNRRYA+IGDVIVAVIKEAVPN PLERSEVIRAVIVRT KEL+R+NGM IRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTLLNVADNSGARELMCIRILGASNRRYANIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTRKELKRENGMRIRYDDNAAVVIDQEGNPKG 95          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_MORIN (50S ribosomal protein L16, chloroplastic OS=Morus indica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.028e-41
Identity = 82/98 (83.67%), Postives = 84/98 (85.71%), Query Frame = -1
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKP+T+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGV EN           KMPIRTQFIISG
Sbjct:   38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPITVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVPENIARKAIAIAASKMPIRTQFIISG 135          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_SPIOL (50S ribosomal protein L16, chloroplastic OS=Spinacia oleracea GN=rpl16 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.789e-40
Identity = 82/98 (83.67%), Postives = 84/98 (85.71%), Query Frame = -1
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPGRILYE+SGVAEN           KMPIRTQFIISG
Sbjct:   38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAVAIAASKMPIRTQFIISG 135          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_LOTJA (50S ribosomal protein L16, chloroplastic OS=Lotus japonicus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.336e-40
Identity = 81/98 (82.65%), Postives = 85/98 (86.73%), Query Frame = -1
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RNVRRGG+IWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPG+I+YEM GVAEN           KMPIRTQFIISG
Sbjct:   38 EPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKIVYEMGGVAENIARKAISIAASKMPIRTQFIISG 135          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_SOYBN (50S ribosomal protein L16, chloroplastic OS=Glycine max GN=rpl16 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.984e-40
Identity = 81/98 (82.65%), Postives = 84/98 (85.71%), Query Frame = -1
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RNVRRGG+IWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPG+ILYEM GV EN           KMPIRTQFIISG
Sbjct:   38 EPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIASSKMPIRTQFIISG 135          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_DAUCA (50S ribosomal protein L16, chloroplastic OS=Daucus carota GN=rpl16 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.204e-40
Identity = 81/98 (82.65%), Postives = 82/98 (83.67%), Query Frame = -1
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN           KMPIRTQFIISG
Sbjct:   38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISIASSKMPIRTQFIISG 135          
The following BLAST results are available for this feature:
BLAST of CX046964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK16_EUCGG1.618e-4185.7150S ribosomal protein L16, chloroplastic OS=Eucaly... [more]
RK16_MANES2.113e-4185.7150S ribosomal protein L16, chloroplastic OS=Maniho... [more]
RK16_CARPA2.113e-4184.6950S ribosomal protein L16, chloroplastic OS=Carica... [more]
RK16_CUCSA2.759e-4185.7150S ribosomal protein L16, chloroplastic OS=Cucumi... [more]
RK14_LEMMI3.604e-4190.5350S ribosomal protein L14, chloroplastic OS=Lemna ... [more]
RK16_MORIN8.028e-4183.6750S ribosomal protein L16, chloroplastic OS=Morus ... [more]
RK16_SPIOL1.789e-4083.6750S ribosomal protein L16, chloroplastic OS=Spinac... [more]
RK16_LOTJA2.336e-4082.6550S ribosomal protein L16, chloroplastic OS=Lotus ... [more]
RK16_SOYBN3.984e-4082.6550S ribosomal protein L16, chloroplastic OS=Glycin... [more]
RK16_DAUCA5.204e-4082.6550S ribosomal protein L16, chloroplastic OS=Daucus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_11C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C08-F16-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046964 ID=CX046964; Name=CX046964; organism=Citrus sinensis; type=EST; length=709bp
TTCCCTTTGGATTTCCTTCGTGATCAATGACAACTGCAGCATTGTCATCG
TACCGTATTATCATACCGTTATCACGTCTGAGTTCTTTACAAGTACGTAC
AATTACAGCTCTGATCACTTCTGATCTTTCTAGAGGCGTATTGGGTACTG
CTTCCTTGATCACAGCAACAATAACGTCACCAATATGAGCATATCTACGA
TTACTGGCTCCTATGATTCGAATACACATCAATTCTCGGGCACCGCTATT
GTCTGCTACATTCAAATGGGTTTGAGGTTGAATCATATCGTTTTTTGAGT
CCGTTTTTTTAATGTTTAATTTAAAGTAAAGCACTGAAAGGACGAAGTAA
AAAAAAAAAGGGAAGACCCGCATTTTTTATACCCAAGATTTATTTCCTTT
GTTTCGACATTCCTATCCCGAAATAATGAATTGAGTTCTTATAGGCATTT
TGGACGCCGCTATTGAAATAGCCTTTCGAGCTATATTTTCAGCTACTCCA
CTCATTTCATAAAGTATTCTACCCGGTTTAACGACGGCTACCCAATATTC
GGGGGATCCTTTACCGGACCCCATACGGGTTTCCGTGGGTCTTAGTGTAA
CGGGTTTGTCTGGAAAGATACGTACCCATATTTTTCCCCCGCGCCGTACA
TTTCGTGGCATTGCCCGGCGCCCCGCTTCGATTTGTCTAGATGTGATCCA
AGCGGGTTC
back to top