CX046964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_PELHO (50S ribosomal protein L16, chloroplastic OS=Pelargonium hortorum GN=rpl16 PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 6.796e-40 Identity = 80/97 (82.47%), Postives = 84/97 (86.60%), Query Frame = -1 Query: 419 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIIS 709 EPAW+TSRQIEAGRRAM RNVRRGGKIWVRIFPDKPVT++PT+TRMGSGKGSPEYWVAVVKPGRILYEM GVAEN KMPIRTQFIIS Sbjct: 38 EPAWLTSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVKPTQTRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAIEIAASKMPIRTQFIIS 134
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_CUSOB (50S ribosomal protein L14, plastid OS=Cuscuta obtusiflora GN=rpl14 PE=3 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 8.876e-40 Identity = 79/95 (83.16%), Postives = 89/95 (93.68%), Query Frame = -1 Query: 2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286 MIQ QTHLNVADNSGAR +MCIRIIG+SNRRYAHIGD+IVAVIK+AVPN LE+SEV+RAVIVRT KEL+RDNG+I+RYDDNAAV+ID EGNPKG Sbjct: 1 MIQSQTHLNVADNSGARTIMCIRIIGSSNRRYAHIGDIIVAVIKDAVPNMTLEKSEVVRAVIVRTRKELKRDNGIILRYDDNAAVIIDKEGNPKG 95
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_TOBAC (50S ribosomal protein L16, chloroplastic OS=Nicotiana tabacum GN=rpl16 PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39 Identity = 81/97 (83.51%), Postives = 81/97 (83.51%), Query Frame = -1 Query: 419 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIIS 709 EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVTLRP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN KMPIRTQFIIS Sbjct: 38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAASKMPIRTQFIIS 134
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_SOLLC (50S ribosomal protein L16, chloroplastic OS=Solanum lycopersicum GN=rpl16 PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39 Identity = 81/97 (83.51%), Postives = 81/97 (83.51%), Query Frame = -1 Query: 419 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIIS 709 EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVTLRP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN KMPIRTQFIIS Sbjct: 38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAASKMPIRTQFIIS 134
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_SOLBU (50S ribosomal protein L16, chloroplastic OS=Solanum bulbocastanum GN=rpl16 PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39 Identity = 81/97 (83.51%), Postives = 81/97 (83.51%), Query Frame = -1 Query: 419 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIIS 709 EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVTLRP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN KMPIRTQFIIS Sbjct: 38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAASKMPIRTQFIIS 134
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_POPTR (50S ribosomal protein L16, chloroplastic OS=Populus trichocarpa GN=rpl16 PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39 Identity = 80/96 (83.33%), Postives = 83/96 (86.46%), Query Frame = -1 Query: 422 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFII 709 EPAWITSRQIEAGRRAM RNVRRGGKIWVRIFPDKPVTLRP+ETRMGSGKGSPEYWVAVVKPGR++YEM GVAEN KMPIRTQFII Sbjct: 38 EPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPSETRMGSGKGSPEYWVAVVKPGRMIYEMGGVAENIARKAISIAASKMPIRTQFII 133
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_POPAL (50S ribosomal protein L16, chloroplastic OS=Populus alba GN=rpl16 PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39 Identity = 80/96 (83.33%), Postives = 83/96 (86.46%), Query Frame = -1 Query: 422 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFII 709 EPAWITSRQIEAGRRAM RNVRRGGKIWVRIFPDKPVTLRP+ETRMGSGKGSPEYWVAVVKPGR++YEM GVAEN KMPIRTQFII Sbjct: 38 EPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPSETRMGSGKGSPEYWVAVVKPGRMIYEMGGVAENIAKKAISIAASKMPIRTQFII 133
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_NICSY (50S ribosomal protein L16, chloroplastic OS=Nicotiana sylvestris GN=rpl16 PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39 Identity = 81/97 (83.51%), Postives = 81/97 (83.51%), Query Frame = -1 Query: 419 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIIS 709 EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVTLRP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN KMPIRTQFIIS Sbjct: 38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAASKMPIRTQFIIS 134
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_ATRBE (50S ribosomal protein L16, chloroplastic OS=Atropa belladonna GN=rpl16 PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39 Identity = 81/97 (83.51%), Postives = 81/97 (83.51%), Query Frame = -1 Query: 419 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIIS 709 EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVTLRP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN KMPIRTQFIIS Sbjct: 38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAASKMPIRTQFIIS 134
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_VIGUN (50S ribosomal protein L16, chloroplastic (Fragment) OS=Vigna unguiculata GN=rpl16 PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39 Identity = 80/98 (81.63%), Postives = 83/98 (84.69%), Query Frame = -1 Query: 416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709 EPAWITSRQIEAGRRAM RNVRRGG+IWVRIFPDKPVT+RPTETRMGSGKG PEYWVAVVKPG+ILYEM GV EN KMPIRTQFIISG Sbjct: 40 EPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGFPEYWVAVVKPGKILYEMGGVPENIARKAISIASSKMPIRTQFIISG 137 The following BLAST results are available for this feature:
BLAST of CX046964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046964 ID=CX046964; Name=CX046964; organism=Citrus sinensis; type=EST; length=709bpback to top |