CX046964

Overview
NameCX046964
Unique NameCX046964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_PELHO (50S ribosomal protein L16, chloroplastic OS=Pelargonium hortorum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.796e-40
Identity = 80/97 (82.47%), Postives = 84/97 (86.60%), Query Frame = -1
Query:  419 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIIS 709
            EPAW+TSRQIEAGRRAM RNVRRGGKIWVRIFPDKPVT++PT+TRMGSGKGSPEYWVAVVKPGRILYEM GVAEN           KMPIRTQFIIS
Sbjct:   38 EPAWLTSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVKPTQTRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAIEIAASKMPIRTQFIIS 134          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_CUSOB (50S ribosomal protein L14, plastid OS=Cuscuta obtusiflora GN=rpl14 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.876e-40
Identity = 79/95 (83.16%), Postives = 89/95 (93.68%), Query Frame = -1
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQ QTHLNVADNSGAR +MCIRIIG+SNRRYAHIGD+IVAVIK+AVPN  LE+SEV+RAVIVRT KEL+RDNG+I+RYDDNAAV+ID EGNPKG
Sbjct:    1 MIQSQTHLNVADNSGARTIMCIRIIGSSNRRYAHIGDIIVAVIKDAVPNMTLEKSEVVRAVIVRTRKELKRDNGIILRYDDNAAVIIDKEGNPKG 95          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_TOBAC (50S ribosomal protein L16, chloroplastic OS=Nicotiana tabacum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39
Identity = 81/97 (83.51%), Postives = 81/97 (83.51%), Query Frame = -1
Query:  419 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIIS 709
            EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVTLRP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN           KMPIRTQFIIS
Sbjct:   38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAASKMPIRTQFIIS 134          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_SOLLC (50S ribosomal protein L16, chloroplastic OS=Solanum lycopersicum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39
Identity = 81/97 (83.51%), Postives = 81/97 (83.51%), Query Frame = -1
Query:  419 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIIS 709
            EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVTLRP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN           KMPIRTQFIIS
Sbjct:   38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAASKMPIRTQFIIS 134          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_SOLBU (50S ribosomal protein L16, chloroplastic OS=Solanum bulbocastanum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39
Identity = 81/97 (83.51%), Postives = 81/97 (83.51%), Query Frame = -1
Query:  419 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIIS 709
            EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVTLRP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN           KMPIRTQFIIS
Sbjct:   38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAASKMPIRTQFIIS 134          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_POPTR (50S ribosomal protein L16, chloroplastic OS=Populus trichocarpa GN=rpl16 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39
Identity = 80/96 (83.33%), Postives = 83/96 (86.46%), Query Frame = -1
Query:  422 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFII 709
            EPAWITSRQIEAGRRAM RNVRRGGKIWVRIFPDKPVTLRP+ETRMGSGKGSPEYWVAVVKPGR++YEM GVAEN           KMPIRTQFII
Sbjct:   38 EPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPSETRMGSGKGSPEYWVAVVKPGRMIYEMGGVAENIARKAISIAASKMPIRTQFII 133          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_POPAL (50S ribosomal protein L16, chloroplastic OS=Populus alba GN=rpl16 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39
Identity = 80/96 (83.33%), Postives = 83/96 (86.46%), Query Frame = -1
Query:  422 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFII 709
            EPAWITSRQIEAGRRAM RNVRRGGKIWVRIFPDKPVTLRP+ETRMGSGKGSPEYWVAVVKPGR++YEM GVAEN           KMPIRTQFII
Sbjct:   38 EPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPSETRMGSGKGSPEYWVAVVKPGRMIYEMGGVAENIAKKAISIAASKMPIRTQFII 133          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_NICSY (50S ribosomal protein L16, chloroplastic OS=Nicotiana sylvestris GN=rpl16 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39
Identity = 81/97 (83.51%), Postives = 81/97 (83.51%), Query Frame = -1
Query:  419 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIIS 709
            EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVTLRP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN           KMPIRTQFIIS
Sbjct:   38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAASKMPIRTQFIIS 134          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_ATRBE (50S ribosomal protein L16, chloroplastic OS=Atropa belladonna GN=rpl16 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39
Identity = 81/97 (83.51%), Postives = 81/97 (83.51%), Query Frame = -1
Query:  419 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIIS 709
            EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVTLRP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN           KMPIRTQFIIS
Sbjct:   38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAASKMPIRTQFIIS 134          
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_VIGUN (50S ribosomal protein L16, chloroplastic (Fragment) OS=Vigna unguiculata GN=rpl16 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 80/98 (81.63%), Postives = 83/98 (84.69%), Query Frame = -1
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RNVRRGG+IWVRIFPDKPVT+RPTETRMGSGKG PEYWVAVVKPG+ILYEM GV EN           KMPIRTQFIISG
Sbjct:   40 EPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGFPEYWVAVVKPGKILYEMGGVPENIARKAISIASSKMPIRTQFIISG 137          
The following BLAST results are available for this feature:
BLAST of CX046964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK16_PELHO6.796e-4082.4750S ribosomal protein L16, chloroplastic OS=Pelarg... [more]
RK14_CUSOB8.876e-4083.1650S ribosomal protein L14, plastid OS=Cuscuta obtu... [more]
RK16_TOBAC1.159e-3983.5150S ribosomal protein L16, chloroplastic OS=Nicoti... [more]
RK16_SOLLC1.159e-3983.5150S ribosomal protein L16, chloroplastic OS=Solanu... [more]
RK16_SOLBU1.159e-3983.5150S ribosomal protein L16, chloroplastic OS=Solanu... [more]
RK16_POPTR1.159e-3983.3350S ribosomal protein L16, chloroplastic OS=Populu... [more]
RK16_POPAL1.159e-3983.3350S ribosomal protein L16, chloroplastic OS=Populu... [more]
RK16_NICSY1.159e-3983.5150S ribosomal protein L16, chloroplastic OS=Nicoti... [more]
RK16_ATRBE1.159e-3983.5150S ribosomal protein L16, chloroplastic OS=Atropa... [more]
RK16_VIGUN1.977e-3981.6350S ribosomal protein L16, chloroplastic (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C08-F16-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046964 ID=CX046964; Name=CX046964; organism=Citrus sinensis; type=EST; length=709bp
TTCCCTTTGGATTTCCTTCGTGATCAATGACAACTGCAGCATTGTCATCG
TACCGTATTATCATACCGTTATCACGTCTGAGTTCTTTACAAGTACGTAC
AATTACAGCTCTGATCACTTCTGATCTTTCTAGAGGCGTATTGGGTACTG
CTTCCTTGATCACAGCAACAATAACGTCACCAATATGAGCATATCTACGA
TTACTGGCTCCTATGATTCGAATACACATCAATTCTCGGGCACCGCTATT
GTCTGCTACATTCAAATGGGTTTGAGGTTGAATCATATCGTTTTTTGAGT
CCGTTTTTTTAATGTTTAATTTAAAGTAAAGCACTGAAAGGACGAAGTAA
AAAAAAAAAGGGAAGACCCGCATTTTTTATACCCAAGATTTATTTCCTTT
GTTTCGACATTCCTATCCCGAAATAATGAATTGAGTTCTTATAGGCATTT
TGGACGCCGCTATTGAAATAGCCTTTCGAGCTATATTTTCAGCTACTCCA
CTCATTTCATAAAGTATTCTACCCGGTTTAACGACGGCTACCCAATATTC
GGGGGATCCTTTACCGGACCCCATACGGGTTTCCGTGGGTCTTAGTGTAA
CGGGTTTGTCTGGAAAGATACGTACCCATATTTTTCCCCCGCGCCGTACA
TTTCGTGGCATTGCCCGGCGCCCCGCTTCGATTTGTCTAGATGTGATCCA
AGCGGGTTC
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