CX046964

Overview
NameCX046964
Unique NameCX046964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_PHAVU (50S ribosomal protein L16, chloroplastic OS=Phaseolus vulgaris GN=rpl16 PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 80/98 (81.63%), Postives = 83/98 (84.69%), Query Frame = -1 
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RNVRRGG+IWVRIFPDKPVT+RPTETRMGSGKG PEYWVAVVKPG+ILYEM GV EN           KMPIRTQFIISG
Sbjct:   38 EPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGFPEYWVAVVKPGKILYEMGGVPENIARKAISIASSKMPIRTQFIISG 135
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_PHAAN (50S ribosomal protein L16, chloroplastic OS=Phaseolus angularis GN=rpl16 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 80/98 (81.63%), Postives = 83/98 (84.69%), Query Frame = -1 
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RNVRRGG+IWVRIFPDKPVT+RPTETRMGSGKG PEYWVAVVKPG+ILYEM GV EN           KMPIRTQFIISG
Sbjct:   39 EPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGFPEYWVAVVKPGKILYEMGGVPENIARKAISIASSKMPIRTQFIISG 136
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_OENPA (50S ribosomal protein L16, chloroplastic OS=Oenothera parviflora GN=rpl16 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 81/98 (82.65%), Postives = 82/98 (83.67%), Query Frame = -1 
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RNVRRGGK WVRIFPDKPVTLR  ETRMGSGKG+PEYWVAVVKPGRILYEM GVAEN           KMPIRTQFIISG
Sbjct:   38 EPAWITSRQIEAGRRAMTRNVRRGGKTWVRIFPDKPVTLRAAETRMGSGKGNPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFIISG 135
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_OENGL (50S ribosomal protein L16, chloroplastic OS=Oenothera glazioviana GN=rpl16 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 81/98 (82.65%), Postives = 82/98 (83.67%), Query Frame = -1 
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RNVRRGGK WVRIFPDKPVTLR  ETRMGSGKG+PEYWVAVVKPGRILYEM GVAEN           KMPIRTQFIISG
Sbjct:   38 EPAWITSRQIEAGRRAMTRNVRRGGKTWVRIFPDKPVTLRAAETRMGSGKGNPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFIISG 135
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_OENEH (50S ribosomal protein L16, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl16 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 81/98 (82.65%), Postives = 82/98 (83.67%), Query Frame = -1 
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RNVRRGGK WVRIFPDKPVTLR  ETRMGSGKG+PEYWVAVVKPGRILYEM GVAEN           KMPIRTQFIISG
Sbjct:   38 EPAWITSRQIEAGRRAMTRNVRRGGKTWVRIFPDKPVTLRAAETRMGSGKGNPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFIISG 135
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_OENBI (50S ribosomal protein L16, chloroplastic OS=Oenothera biennis GN=rpl16 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 81/98 (82.65%), Postives = 82/98 (83.67%), Query Frame = -1 
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RNVRRGGK WVRIFPDKPVTLR  ETRMGSGKG+PEYWVAVVKPGRILYEM GVAEN           KMPIRTQFIISG
Sbjct:   38 EPAWITSRQIEAGRRAMTRNVRRGGKTWVRIFPDKPVTLRAAETRMGSGKGNPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFIISG 135
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_OENAR (50S ribosomal protein L16, chloroplastic OS=Oenothera argillicola GN=rpl16 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 81/98 (82.65%), Postives = 82/98 (83.67%), Query Frame = -1 
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RNVRRGGK WVRIFPDKPVTLR  ETRMGSGKG+PEYWVAVVKPGRILYEM GVAEN           KMPIRTQFIISG
Sbjct:   38 EPAWITSRQIEAGRRAMTRNVRRGGKTWVRIFPDKPVTLRAAETRMGSGKGNPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFIISG 135
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_LACSA (50S ribosomal protein L16, chloroplastic OS=Lactuca sativa GN=rpl16 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 80/98 (81.63%), Postives = 81/98 (82.65%), Query Frame = -1 
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN           KMPIR QFIISG
Sbjct:   38 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISIAASKMPIRAQFIISG 135
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_HELAN (50S ribosomal protein L16, chloroplastic OS=Helianthus annuus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 80/98 (81.63%), Postives = 81/98 (82.65%), Query Frame = -1 
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN           KMPIR QFIISG
Sbjct:   39 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISIAASKMPIRAQFIISG 136
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK16_GUIAB (50S ribosomal protein L16, chloroplastic OS=Guizotia abyssinica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 80/98 (81.63%), Postives = 81/98 (82.65%), Query Frame = -1 
Query:  416 EPAWITSRQIEAGRRAMPRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXKMPIRTQFIISG 709
            EPAWITSRQIEAGRRAM RN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN           KMPIR QFIISG
Sbjct:   39 EPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISIAASKMPIRAQFIISG 136
The following BLAST results are available for this feature:
BLAST of CX046964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK16_PHAVU1.977e-3981.6350S ribosomal protein L16, chloroplastic OS=Phaseo... [more]
RK16_PHAAN1.977e-3981.6350S ribosomal protein L16, chloroplastic OS=Phaseo... [more]
RK16_OENPA1.977e-3982.6550S ribosomal protein L16, chloroplastic OS=Oenoth... [more]
RK16_OENGL1.977e-3982.6550S ribosomal protein L16, chloroplastic OS=Oenoth... [more]
RK16_OENEH1.977e-3982.6550S ribosomal protein L16, chloroplastic OS=Oenoth... [more]
RK16_OENBI1.977e-3982.6550S ribosomal protein L16, chloroplastic OS=Oenoth... [more]
RK16_OENAR1.977e-3982.6550S ribosomal protein L16, chloroplastic OS=Oenoth... [more]
RK16_LACSA1.977e-3981.6350S ribosomal protein L16, chloroplastic OS=Lactuc... [more]
RK16_HELAN1.977e-3981.6350S ribosomal protein L16, chloroplastic OS=Helian... [more]
RK16_GUIAB1.977e-3981.6350S ribosomal protein L16, chloroplastic OS=Guizot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C08-F16-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046964 ID=CX046964; Name=CX046964; organism=Citrus sinensis; type=EST; length=709bp
TTCCCTTTGGATTTCCTTCGTGATCAATGACAACTGCAGCATTGTCATCG
TACCGTATTATCATACCGTTATCACGTCTGAGTTCTTTACAAGTACGTAC
AATTACAGCTCTGATCACTTCTGATCTTTCTAGAGGCGTATTGGGTACTG
CTTCCTTGATCACAGCAACAATAACGTCACCAATATGAGCATATCTACGA
TTACTGGCTCCTATGATTCGAATACACATCAATTCTCGGGCACCGCTATT
GTCTGCTACATTCAAATGGGTTTGAGGTTGAATCATATCGTTTTTTGAGT
CCGTTTTTTTAATGTTTAATTTAAAGTAAAGCACTGAAAGGACGAAGTAA
AAAAAAAAAGGGAAGACCCGCATTTTTTATACCCAAGATTTATTTCCTTT
GTTTCGACATTCCTATCCCGAAATAATGAATTGAGTTCTTATAGGCATTT
TGGACGCCGCTATTGAAATAGCCTTTCGAGCTATATTTTCAGCTACTCCA
CTCATTTCATAAAGTATTCTACCCGGTTTAACGACGGCTACCCAATATTC
GGGGGATCCTTTACCGGACCCCATACGGGTTTCCGTGGGTCTTAGTGTAA
CGGGTTTGTCTGGAAAGATACGTACCCATATTTTTCCCCCGCGCCGTACA
TTTCGTGGCATTGCCCGGCGCCCCGCTTCGATTTGTCTAGATGTGATCCA
AGCGGGTTC
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