CX046963

Overview
NameCX046963
Unique NameCX046963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_ESCF3 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=sthA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = -3 
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_ECOUT (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = -3 
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_ECOSE (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain SE11) GN=sthA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = -3 
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_ECOLU (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = -3 
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_ECOLI (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain K12) GN=sthA PE=1 SV=5)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = -3 
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_ECOLC (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=sthA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = -3 
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_ECOL5 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = -3 
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTTMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_ECOK1 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O1:K1 / APEC GN=sthA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = -3 
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_ECOHS (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=sthA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = -3 
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_ECODH (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=sthA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = -3 
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
The following BLAST results are available for this feature:
BLAST of CX046963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
STHA_ESCF35.413e-2637.89Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOUT5.413e-2637.89Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOSE5.413e-2637.89Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOLU5.413e-2637.89Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOLI5.413e-2637.89Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOLC5.413e-2637.89Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOL55.413e-2637.89Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOK15.413e-2637.89Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOHS5.413e-2637.89Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECODH5.413e-2637.89Soluble pyridine nucleotide transhydrogenase OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C07-F14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046963 ID=CX046963; Name=CX046963; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTAGCTCAAGTCAATGTATCTCTCAATTATTATTTTGCGCATC
AAAACATAACAAAAGAAACCCAAGTTATTCCATCATCATATAAACATATA
AATGAGGAAAAACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGGACAA
TTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTCAAAC
AAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTTGTCG
TGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGATGTGC
ATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATGGCCA
GGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATGAACC
CCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTCCTTC
AGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAATTTCC
CCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTTCCCA
ACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTATCATA
GTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACCCCAT
CCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCCAATC
GCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTATCCG
TCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCAGCGG
TGAATGGAGTCCGGCCAG
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