CX046963

Overview
NameCX046963
Unique NameCX046963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_VIBCH (Soluble pyridine nucleotide transhydrogenase OS=Vibrio cholerae GN=sthA PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.985e-25
Identity = 66/190 (34.74%), Postives = 108/190 (56.84%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE-FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L+ +G++ D  G++ VN  + T +  +YA+GDVI  P LA  A + G    +  + G+  H+  + +P  +YT PE++SVG+TE+++    V Y VG+  F   +RA+      G +KIL  +ET +ILG+H     A E+IH  +A++    +A++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDKLNLESVGLQADSRGQLVVNANYQTQVEHIYAVGDVIGYPSLASAAYDQGRFVAQAIIHGQAAHLLTEDIPTGIYTIPEISSVGRTEQELTAAKVPYEVGRASFKHLARAQIAGKDIGSLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGEANTIEYFVNTTFNYPTMAEAFRVAAL 459          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_VIBC3 (Soluble pyridine nucleotide transhydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=sthA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.985e-25
Identity = 66/190 (34.74%), Postives = 108/190 (56.84%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE-FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L+ +G++ D  G++ VN  + T +  +YA+GDVI  P LA  A + G    +  + G+  H+  + +P  +YT PE++SVG+TE+++    V Y VG+  F   +RA+      G +KIL  +ET +ILG+H     A E+IH  +A++    +A++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDKLNLESVGLQADSRGQLVVNANYQTQVEHIYAVGDVIGYPSLASAAYDQGRFVAQAIIHGQAAHLLTEDIPTGIYTIPEISSVGRTEQELTAAKVPYEVGRASFKHLARAQIAGKDIGSLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGEANTIEYFVNTTFNYPTMAEAFRVAAL 459          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_SERP5 (Soluble pyridine nucleotide transhydrogenase OS=Serratia proteamaculans (strain 568) GN=sthA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.817e-25
Identity = 69/191 (36.13%), Postives = 109/191 (57.07%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH--GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  LGL+ +G+E+D  G + VN  + T +  +YA+GDVI  P LA  A + G    + +A     GH+  D +P  +YT PE++SVGKTE+++  + V Y VG+  F   +RA+      G +KIL  ++T +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:  269 GRTGNTDSLGLENVGLESDSRGLLKVNSMYQTALSHIYAVGDVIGYPSLASAAYDQGRIAAQAIASGEASGHLIED-IPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIAGMNVGSLKILFHRDTLQILGIHCFGERAAEIIHIGQAIMEQKGEGNTIEYFVNTTFNYPTMAEAYRVAAL 458          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_VIBSL (Soluble pyridine nucleotide transhydrogenase OS=Vibrio splendidus (strain LGP32) GN=sthA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.333e-24
Identity = 72/193 (37.31%), Postives = 109/193 (56.48%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG----VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  +G+E D  G++ VN  + T++  VYA+GDVI  P LA  A + G     A V+  A +H   D   +P  +YT PE++SVGKTE+++    V Y VG+  F   +RA+      G +KIL  +ET +ILG+H+    A E+IH  +A++    +A++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDKLNLGAVGLEADSRGQVSVNSNYQTSVEHVYAVGDVIGYPSLASAAYDQGRFVAQAVVKGEAERHLIED---IPTGIYTIPEISSVGKTEQELTAAKVPYEVGRSSFKHLARAQIAGKDIGSLKILFHRETKEILGIHVFGERAAEIIHIGQAIMEQKGEANTIEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_VIBPA (Soluble pyridine nucleotide transhydrogenase OS=Vibrio parahaemolyticus GN=sthA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.333e-24
Identity = 68/190 (35.79%), Postives = 107/190 (56.32%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA-GKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L LD +G+E+D  G++ VN  + T +  +YA+GDVI  P LA  A + G    + +  G+  +   + +P  +YT PE++SVGKTE+++    V Y VG+  F   +RA+      G +KIL  +ET +ILG+H     A E+IH  +A++     A++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDKLSLDVVGLESDSRGQLKVNRNYQTAVEHIYAVGDVIGYPSLASAAYDQGRFVAQAITKGQAENYLIEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRSSFKHLARAQIAGKDVGSLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGQANTIEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_PSEF5 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=sthA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.333e-24
Identity = 64/188 (34.04%), Postives = 107/188 (56.91%), Query Frame = -3
Query:  262 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAA 816
            GRT  T  LG++ IGV+ +  G+I V+E + T +P +Y  GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E+++ +  V Y VGK  F   +RA+   + +G++KIL  +ET ++LGVH     A E++H  +A+++   + ++ +        +PTM+EA + AA
Sbjct:  269 GRTGNTDKLGMENIGVKVNSRGQIEVDENYRTCVPNIYGAGDVIGWPSLASAAHDQGRSAAGSIVDNGSWRFVNDVPTGIYTIPEISSIGKNEQELTQAKVPYEVGKAFFKGMARAQIAGEPQGMLKILFHRETLEVLGVHCFGYQASEIVHIGQAIMSQPGELNTLKYFVNTTFNYPTMAEAYRVAA 456          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_PHOLL (Soluble pyridine nucleotide transhydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=sthA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.333e-24
Identity = 68/190 (35.79%), Postives = 107/190 (56.32%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDY-DKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  LGL  +G+E D  G + VN+ + T+   +YA+GDVI  P LA  A + G    + +   +  V   + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+      G +KIL  +ET +ILG+H     A E+IH  +A++    ++++ E        +PTM+EA + AA+
Sbjct:  269 GRTGNTDTLGLKNVGLEADSRGLLKVNKIYQTSNENIYAVGDVIGYPSLASAAYDQGRIAAQAMTKGNAEVHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIAGMNVGSLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGESNTIEYFVNTTFNYPTMAEAYRVAAL 458          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_MARMS (Soluble pyridine nucleotide transhydrogenase OS=Marinomonas sp. (strain MWYL1) GN=sthA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.333e-24
Identity = 65/189 (34.39%), Postives = 102/189 (53.97%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHA---HPTMSEALKEAAM 816
            GR+  T  LGL+ I +E +  G++ VN+ + T +  VYA GDVI  P LA  A + G A    + G  G     +VP  +YT PE++SVGKTE ++    V Y VG+  F   +RA+   +A G++KIL  +E+ ++LG+H     A E++H     +        +    +    +PTM+EA + AA+
Sbjct:  269 GRSGNTDNLGLESINLEVNSRGQLAVNDTYQTQVENVYAAGDVIGWPSLASAAYDQGRAAAANMFGAPGGEFISEVPTGIYTIPEISSVGKTEAELTAEKVPYEVGRAFFKNTARAQITGEAVGMLKILFHRESLELLGIHCFGDQASEIVHIGQAIMKQPGKQNTLKYFLNTTFNYPTMAEAYRVAAL 457          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_PSEU5 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas stutzeri (strain A1501) GN=sthA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.741e-24
Identity = 65/188 (34.57%), Postives = 101/188 (53.72%), Query Frame = -3
Query:  262 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI---ARVCHAHPTMSEALKEAA 816
            GRT  T  LGL+ IG++ +  G++ V+E + T I  +YA GDVI  P LA  A + G +    +         D VP  +YT PE++S+GK E ++ +  + Y VGK  F + +RA+   +  G++KIL  +ET ++LGVH     A E++H     +N    +  I         +PTM+EA + AA
Sbjct:  269 GRTGNTDKLGLENIGLKANSRGQVQVDEHYRTEIGNIYAAGDVIGWPSLASAAYDQGRSAAGSIVENDSWRFVDDVPTGIYTIPEISSIGKNERELTQAKIPYEVGKAFFKSMARAQISFEPVGMLKILFHRETLEVLGVHCFGYQASEIVHIGQAIMNQKGPANSIKYFVNTTFNYPTMAEAYRVAA 456          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: MERA_SHEPU (Mercuric reductase OS=Shewanella putrefaciens GN=merA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.741e-24
Identity = 67/185 (36.22%), Postives = 94/185 (50.81%), Query Frame = -3
Query:  262 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 816
            GR   T  L L  +GV T+K G I VNER  TN+PG+YA GD    P   + A   G      + G +  +D   +P V++T P+VA+VG TEEQ     +E            RA A  + +G +K++ EK T +++G  I+A   GELI  A LAI    +  ++A     + TM E LK  A
Sbjct:  358 GRHANTCQLNLGAVGVTTNKKGEIVVNERMETNVPGIYAAGDCCNMPQFVYVAAAAGSRSGINMTGGYAKLDLSTMPAVIFTDPQVATVGLTEEQANAQDIETDSRVLEMENVPRALANFETDGFIKLVTEKATGRLIGAQILAHEGGELIQSAALAIRNRMTVTELADQLFPYLTMVEGLKLCA 542          
The following BLAST results are available for this feature:
BLAST of CX046963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
STHA_VIBCH5.985e-2534.74Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_VIBC35.985e-2534.74Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_SERP57.817e-2536.13Soluble pyridine nucleotide transhydrogenase OS=Se... [more]
STHA_VIBSL1.333e-2437.31Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_VIBPA1.333e-2435.79Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_PSEF51.333e-2434.04Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PHOLL1.333e-2435.79Soluble pyridine nucleotide transhydrogenase OS=Ph... [more]
STHA_MARMS1.333e-2434.39Soluble pyridine nucleotide transhydrogenase OS=Ma... [more]
STHA_PSEU51.741e-2434.57Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
MERA_SHEPU1.741e-2436.22Mercuric reductase OS=Shewanella putrefaciens GN=m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C07-F14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046963 ID=CX046963; Name=CX046963; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTAGCTCAAGTCAATGTATCTCTCAATTATTATTTTGCGCATC
AAAACATAACAAAAGAAACCCAAGTTATTCCATCATCATATAAACATATA
AATGAGGAAAAACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGGACAA
TTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTCAAAC
AAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTTGTCG
TGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGATGTGC
ATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATGGCCA
GGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATGAACC
CCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTCCTTC
AGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAATTTCC
CCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTTCCCA
ACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTATCATA
GTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACCCCAT
CCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCCAATC
GCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTATCCG
TCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCAGCGG
TGAATGGAGTCCGGCCAG
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