CX046963

Overview
NameCX046963
Unique NameCX046963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: GSHR_DICDI (Glutathione reductase OS=Dictyostelium discoideum GN=gsr PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.023e-16
Identity = 55/186 (29.57%), Postives = 96/186 (51.61%), Query Frame = -3
Query:  274 GRTPFTAGLGLDKIGVE-TDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHV--DYDKVPGVVYTHPEVASVGKTEEQ-VKELGVE-YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 816
            GR P T  LG+DK G++ T++ G I V+E   TN+PGV+A+GD+    +L   A   G    E L      +  +Y+ V  VV++HP + +VG TE++ + + G E  +     F+    +  +      +K++   + +K++G+HI+     E+I    +A+    +  D+   C  HPT +E L
Sbjct:  276 GRVPNTDDLGIDKAGIQLTEQSGFIKVDEFQNTNVPGVHAVGDICGNFLLTPVAIAAGRRLSERLFNGKSDLKFEYENVATVVFSHPPIGTVGLTEQEAITKYGTENIKCYNTSFINMFYSVQVHKVRTSMKLVCLGKEEKVIGLHIIGDGCDEIIQGFAVAVKMGCTKWDLDNTCAIHPTSAEEL 461          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: TRXR2_HUMAN (Thioredoxin reductase 2, mitochondrial OS=Homo sapiens GN=TXNRD2 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 67/192 (34.90%), Postives = 94/192 (48.96%), Query Frame = -3
Query:  280 GRTPFTAGLGLDKIGVETDK-MGRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ---------VKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDK-ILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 816
            GR P T  L L+K GV+T     +I V+ R AT++P +YAIGDV+ G P L   A   G   V+ L  G    +DYD VP  V+T  E   VG +EE+         V+     Y+  +F           D ++  VK++  +E  + +LG+H + PNAGE+     L I   AS   + R    HPT SE
Sbjct:  317 GRVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGR------DASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSE 502          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: TRXR2_BOVIN (Thioredoxin reductase 2, mitochondrial OS=Bos taurus GN=TXNRD2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 63/186 (33.87%), Postives = 94/186 (50.54%), Query Frame = -3
Query:  280 GRTPFTAGLGLDKIGVETDKM-GRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFLAGKHGHV-DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAI---DDAEGIVKILAEKETDK-ILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 816
            GR P TA L L+K GV T+ + G+I V+ +  T++P +YAIGDV  G P L   A   G    + L+G+   + DY  VP  V+T  E   VG +EE       E  V  +          +   D ++  +K++  +E  + +LG+H + PNAGE+I    L I   AS + + R    HPT +E
Sbjct:  304 GRVPETASLNLEKAGVHTNPVTGKILVDAQETTSVPHIYAIGDVAEGRPELTPTAIMAGRLLAQRLSGRTSDLMDYSSVPTTVFTPLEYGCVGLSEEAAVARHGEEHVEVYHAFYKPLEFTVPQRDASQCYIKMVCLREPPQLVLGLHFLGPNAGEVIQGFALGIKCGASYQQLMRTVGIHPTCAE 489          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: GSHR_HAEIN (Glutathione reductase OS=Haemophilus influenzae GN=gor PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 61/184 (33.15%), Postives = 94/184 (51.09%), Query Frame = -3
Query:  280 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP-GPMLAHKAEEDGVACVEFLAGKH--GHVDYDKVPGVVYTHPEVASVGKTEEQ-VKELGVE-YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 816
            GR P T  +GL+  GVET++ G + V++   TN+ G+YA+GD+I  G  L   A   G    E L       ++DY  VP VV++HP + +VG TE Q +++ G E  +V K  F A   A         +K++   + +K++G+H +     E+I    +AI   A+  D       HPT SE
Sbjct:  267 GRVPTTDKIGLENAGVETNEHGYVKVDKYQNTNVKGIYAVGDIIENGIELTPVAVAAGRRLSERLFNNKPTEYLDYSLVPTVVFSHPPIGTVGLTEPQAIEQYGAENVKVYKSSFTAMYTAVTQHRQPCKMKLVCVGKDEKVVGLHGIGFGVDEMIQGFAVAIKMGATKADFDNTVAIHPTGSE 450          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: GSHRP_SPIOL (Glutathione reductase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 52/181 (28.73%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  280 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE-FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ-VKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 816
            GR+P T  L L+ +GVE D+ G + V+E   T++P ++AIGDV     L   A  +G    +    G++   DY  +   V++ P +A VG +EEQ +++   +  V    F       +    + I+K++ + ETDK+LG  +  P+A E++    +A+ + A+          HP+ +E
Sbjct:  287 GRSPNTKRLNLEALGVELDRTGAVKVDEYSRTSVPSIWAIGDVTNRMNLTPVALMEGTCFAKTVFGGQNSKPDYSNIACAVFSIPPLAVVGLSEEQAIEQASGDILVFTSSFNPMKNTISGRQEKTIMKLVVDAETDKVLGASMCGPDAAEIMQGIAIALKFGATKAQFDSTVGIHPSAAE 467          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: LPDA_MYCTU (NAD(P)H dehydrogenase (quinone) OS=Mycobacterium tuberculosis GN=lpdA PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16
Identity = 57/193 (29.53%), Postives = 93/193 (48.19%), Query Frame = -3
Query:  247 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA--MATHD 816
            G  P T+GLGL+++G++  +   + V+    T   G+YA GD      LA  A   G +A    L      +    V   V+T PE+A+VG  +  +    V  R    P   N+RAK  +   G VKI   + T  ++G  ++AP A ELI    +A+    +  ++A+    +P++S ++ EAA  +  HD
Sbjct:  276 GSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLMAHD 468          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: GSHRC_PEA (Glutathione reductase, cytosolic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.078e-16
Identity = 54/181 (29.83%), Postives = 91/181 (50.28%), Query Frame = -3
Query:  280 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKA-EEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ-VKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 816
            GR+P +  L L+K+GVE DK G I V+E   TNIP ++A+GDV     L   A  E  +       G+    DY+ +P  V+  P ++ VG +EEQ V++   +  +    F       +    + ++K++ + +TDK+LG  +  P+A E++    +AI   A+          HP+ +E
Sbjct:  296 GRSPNSKRLNLEKVGVEFDKAGAIVVDEYSRTNIPSIWAVGDVTNRLNLTPVALMEASLFAKTVFGGQASKPDYNDIPYAVFCIPPLSVVGLSEEQAVEQTKGDVLIFTSTFNPMKNTISGRQEKTVMKLVVDAQTDKVLGASMCGPDAPEIVQGIAIAIKCGATKAQFDSTVGIHPSSAE 476          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: TRXR2_MOUSE (Thioredoxin reductase 2, mitochondrial OS=Mus musculus GN=Txnrd2 PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 6.633e-16
Identity = 62/186 (33.33%), Postives = 92/186 (49.46%), Query Frame = -3
Query:  280 GRTPFTAGLGLDKIGVETD-KMGRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFLAGKHGHV-DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEG---IVKILAEKETDK-ILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 816
            GR P T  L L+K G+ T+ K  +I V+ + AT++P +YAIGDV  G P L   A + G    + L GK   + DY  VP  V+T  E   VG +EE+   L  +  V  +          + D +     +K++  +E  + +LG+H + PNAGE+     L I   AS   + +    HPT SE
Sbjct:  317 GRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSE 502          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: GSHR_CANGA (Glutathione reductase OS=Candida glabrata GN=GLR1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.633e-16
Identity = 55/180 (30.56%), Postives = 92/180 (51.11%), Query Frame = -3
Query:  274 GLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG----KHGHVDYDKVPGVVYTHPEVASVGKTEEQ-VKELGVE-YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 795
            G+GL+ +GV+ +   +I  +E   TN+P +Y++GDV     L   A   G      L G    ++  +DY  VP VV++HPE  S+G TE++ +K+ G +  +V    F A   A     +    KI+ E   +K++G+HI+  ++ E++    +AI   A+  D       HPT +E L
Sbjct:  293 GIGLENVGVKLNDKEQIITDEYQNTNVPNIYSLGDVSGRVELTPVAIAAGRKLSNRLFGPEQYRNDKLDYTNVPSVVFSHPEAGSIGLTEDEAIKQYGKDNIKVYTSKFTAMYYAMLEHKSPTRYKIICEGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEEL 472          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: GSHR_SCHPO (Glutathione reductase OS=Schizosaccharomyces pombe GN=pgr1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 58/187 (31.02%), Postives = 90/187 (48.13%), Query Frame = -3
Query:  274 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG--KHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRV----GKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 816
            GR P   GL L+K GV+T   G I  +    TN+P V ++GDV     L   A   G    + L G  K  H+DY++VP VV+ HPE  ++G TE++  +   E ++     KF  L  S  +  D      K++      K++G+H++   + E++    +AI   A+  D       HPT +E L
Sbjct:  274 GRAPKIQGLRLEKAGVKTLPNGIIIADTYQRTNVPTVLSLGDVCGKLELTPVAIAAGRRLSDRLFGGIKDAHLDYEEVPSVVFAHPEAGTIGLTEQEAIDKYGESQIKVYNTKFNGLNYSMVEQEDKVPTTYKLVCAGPLQKVVGLHLVGDFSAEILQGFGVAIKMGATKSDFDSCVAIHPTSAEEL 460          
The following BLAST results are available for this feature:
BLAST of CX046963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
GSHR_DICDI1.023e-1629.57Glutathione reductase OS=Dictyostelium discoideum ... [more]
TRXR2_HUMAN1.336e-1634.90Thioredoxin reductase 2, mitochondrial OS=Homo sap... [more]
TRXR2_BOVIN1.336e-1633.87Thioredoxin reductase 2, mitochondrial OS=Bos taur... [more]
GSHR_HAEIN1.336e-1633.15Glutathione reductase OS=Haemophilus influenzae GN... [more]
GSHRP_SPIOL1.336e-1628.73Glutathione reductase, chloroplastic (Fragment) OS... [more]
LPDA_MYCTU1.745e-1629.53NAD(P)H dehydrogenase (quinone) OS=Mycobacterium t... [more]
GSHRC_PEA5.078e-1629.83Glutathione reductase, cytosolic OS=Pisum sativum ... [more]
TRXR2_MOUSE6.633e-1633.33Thioredoxin reductase 2, mitochondrial OS=Mus musc... [more]
GSHR_CANGA6.633e-1630.56Glutathione reductase OS=Candida glabrata GN=GLR1 ... [more]
GSHR_SCHPO8.663e-1631.02Glutathione reductase OS=Schizosaccharomyces pombe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C07-F14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046963 ID=CX046963; Name=CX046963; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTAGCTCAAGTCAATGTATCTCTCAATTATTATTTTGCGCATC
AAAACATAACAAAAGAAACCCAAGTTATTCCATCATCATATAAACATATA
AATGAGGAAAAACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGGACAA
TTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTCAAAC
AAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTTGTCG
TGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGATGTGC
ATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATGGCCA
GGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATGAACC
CCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTCCTTC
AGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAATTTCC
CCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTTCCCA
ACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTATCATA
GTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACCCCAT
CCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCCAATC
GCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTATCCG
TCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCAGCGG
TGAATGGAGTCCGGCCAG
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