CX046963

Overview
NameCX046963
Unique NameCX046963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: TYTR_TRYCR (Trypanothione reductase OS=Trypanosoma cruzi GN=TPR PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.171e-12
Identity = 56/188 (29.79%), Postives = 84/188 (44.68%), Query Frame = -3
Query:  274 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH-VDYDKVPGVVYTHPEVASVGKTEEQVK---ELGVEYRVGKFPFLAN---SRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 816
            GR+P T  L L   GV   K G + V+E   TN+  +YAIGDV    ML   A  +  A V+ + G +    D+ +V   V++ P + + G  EE      E+   Y     P + N   S+ K       + KI+       +LGVH++  NA E+I    + +  +A   D       HPT +E L
Sbjct:  287 GRSPRTKDLQLQNAGVMI-KNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTNPRKTDHTRVASAVFSIPPIGTCGLIEEVASKRYEVVAVYLSSFTPLMHNISGSKYKTF-----VAKIITNHSDGTVLGVHLLGDNAPEIIQGVGICLKLNAKISDFYNTIGVHPTSAEEL 468          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: GSHR_CAEEL (Probable glutathione reductase 2 OS=Caenorhabditis elegans GN=trxr-2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.208e-11
Identity = 57/187 (30.48%), Postives = 81/187 (43.32%), Query Frame = -3
Query:  280 GRTPFTAGLGLDKIGVETDKM-GRIPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLAGKHGH-VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKF-----PFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 816
            GR P    L LD  GV TDK  G+I  +E    +  GVYA+GD++     L   A + G    + L       V +D V   V+T  E+++VG TEE+  +   E  +  F     PF              +  +    E+ KILG+H + PNA E+I    +A     S  D+      HP  SE
Sbjct:  295 GRVPNLKSLNLDNAGVRTDKRSGKILADEFDRASCNGVYAVGDIVQDRQELTPLAIQSGKLLADRLFSNSKQIVRFDGVATTVFTPLELSTVGLTEEEAIQKHGEDSIEVFHSHFTPFEYVVPQNKDSGFCYVKAVCTRDESQKILGLHFVGPNAAEVIQGYAVAFRVGISMSDLQNTIAIHPCSSE 481          
The following BLAST results are available for this feature:
BLAST of CX046963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
TYTR_TRYCR1.171e-1229.79Trypanothione reductase OS=Trypanosoma cruzi GN=TP... [more]
GSHR_CAEEL2.208e-1130.48Probable glutathione reductase 2 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C07-F14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046963 ID=CX046963; Name=CX046963; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTAGCTCAAGTCAATGTATCTCTCAATTATTATTTTGCGCATC
AAAACATAACAAAAGAAACCCAAGTTATTCCATCATCATATAAACATATA
AATGAGGAAAAACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGGACAA
TTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTCAAAC
AAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTTGTCG
TGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGATGTGC
ATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATGGCCA
GGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATGAACC
CCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTCCTTC
AGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAATTTCC
CCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTTCCCA
ACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTATCATA
GTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACCCCAT
CCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCCAATC
GCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTATCCG
TCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCAGCGG
TGAATGGAGTCCGGCCAG
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