CX046963

Overview
NameCX046963
Unique NameCX046963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: DLDH_MYCTU (Dihydrolipoyl dehydrogenase OS=Mycobacterium tuberculosis GN=lpd PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.533e-31
Identity = 74/185 (40.00%), Postives = 104/185 (56.22%), Query Frame = -3
Query:  268 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHV--DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKE 816
            G  P   G GLDK GV       I V++   TN+  +YAIGDV     LAH AE  GV   E +AG       D+  +P   +  P VAS G TE+Q +  G +  V KFPF AN++A  + D  G VK++A+ +  ++LG H++  +  EL+ E  LA  +D ++ ++AR  H HPTMSEAL+E
Sbjct:  268 GFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQE 452          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: DLDH_MYCBO (Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis GN=lpd PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.533e-31
Identity = 74/185 (40.00%), Postives = 104/185 (56.22%), Query Frame = -3
Query:  268 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHV--DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKE 816
            G  P   G GLDK GV       I V++   TN+  +YAIGDV     LAH AE  GV   E +AG       D+  +P   +  P VAS G TE+Q +  G +  V KFPF AN++A  + D  G VK++A+ +  ++LG H++  +  EL+ E  LA  +D ++ ++AR  H HPTMSEAL+E
Sbjct:  268 GFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQE 452          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEPU (Dihydrolipoyl dehydrogenase OS=Pseudomonas putida GN=lpdV PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.231e-29
Identity = 71/195 (36.41%), Postives = 107/195 (54.87%), Query Frame = -3
Query:  232 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 816
            GR P T G  L+ + ++ +    I ++ER  T++  V+AIGDV   PMLAH+A   G    E +AGK    +   +  V +T PEV  VGKT EQ  + G++  V +FPF AN RA +++   G V+++A ++   ILG   +     EL      ++   A  ED+A   HAHPT+ EA++EAA+      +HI
Sbjct:  266 GRRPRTKGFNLECLDLKMNGAA-IAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALHI 459          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: MERA_BACCE (Mercuric reductase OS=Bacillus cereus GN=merA PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.522e-28
Identity = 70/194 (36.08%), Postives = 106/194 (54.64%), Query Frame = -3
Query:  238 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAE-EDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPI 816
            GR P    L L   GVE    G I +++   T    +Y+ GDV PGP   + A  E G+A    + G +  V+ + VPGV +T P +A+VG TE+Q KE G E +    P  A  RA    +  G+ K++A+ +T K+LG H++A NAG++I+ A LA+ +  +  D+      + TM+E LK  A+ T DK +
Sbjct:  431 GRKPIQTSLNLHAAGVEVGSRGEIVIDDYLKTTNSRIYSAGDVTPGPQFVYVAAYEGGLAARNAIGGLNQKVNLEVVPGVTFTSPSIATVGLTEQQAKEKGYEVKTSVLPLDAVPRALVNRETTGVFKLVADAKTLKVLGAHVVAENAGDVIYAATLAVKFGLTVGDLRETMAPYLTMAEGLK-LAVLTFDKDV 623          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEAE (Dihydrolipoyl dehydrogenase OS=Pseudomonas aeruginosa GN=lpdV PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.428e-28
Identity = 70/196 (35.71%), Postives = 107/196 (54.59%), Query Frame = -3
Query:  232 GRTPFTAGLGLDKIGVETDKMGR-IPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 816
            GR P + G  L+ +G+  D  GR + V+++  T++  V+AIGD+   PMLAH+A   G    E +AGK        +P V +T PEV   G + EQ K+ G++  V  FPF AN RA  ++  EG V+++A ++   ++G   +     EL      ++   A  EDIA   HAHPT+ EA++EAA+      +HI
Sbjct:  271 GRKPRSEGWNLESLGL--DMNGRAVKVDDQCRTSMRNVWAIGDLAGEPMLAHRAMAQGEMVAELIAGKRRQFAPVAIPAVCFTDPEVVVAGLSPEQAKDAGLDCLVASFPFAANGRAMTLEANEGFVRVVARRDNHLVVGWQAVGKAVSELSTAFAQSLEMGARLEDIAGTIHAHPTLGEAVQEAALRALGHALHI 464          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: MERA_STAES (Mercuric reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=merA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.784e-28
Identity = 71/194 (36.60%), Postives = 106/194 (54.64%), Query Frame = -3
Query:  238 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAE-EDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPI 816
            GR P T  L L+  GV+T K G +  NE   T+   +YA GDV  GP   + A  E G+     L      +D   VPGV +T+P +A+VG TE+Q KE G + +    P  A  RA    +  G+ K++   +T K++G HI++ NAG++I+ A LA+ +  + ED+      + TM+E LK AA+ T DK +
Sbjct:  347 GRKPNTETLNLESAGVKTGKKGEVLTNEYLQTSNNRIYAAGDVTLGPQFVYVAAYEGGIVANNALGLAKRKIDLRFVPGVTFTNPSIATVGLTEQQAKEKGYDVKTSVLPLDAVPRALVNHETTGVYKLVVNAQTQKLIGAHIVSENAGDVIYAATLAVQFGLTIEDLTDSFAPYLTMAEGLKLAAL-TFDKDV 539          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: MERA_STAAU (Mercuric reductase OS=Staphylococcus aureus GN=merA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.784e-28
Identity = 71/194 (36.60%), Postives = 106/194 (54.64%), Query Frame = -3
Query:  238 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAE-EDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPI 816
            GR P T  L L+  GV+T K G +  NE   T+   +YA GDV  GP   + A  E G+     L      +D   VPGV +T+P +A+VG TE+Q KE G + +    P  A  RA    +  G+ K++   +T K++G HI++ NAG++I+ A LA+ +  + ED+      + TM+E LK AA+ T DK +
Sbjct:  347 GRKPNTETLNLESAGVKTGKKGEVLTNEYLQTSNNRIYAAGDVTLGPQFVYVAAYEGGIVANNALGLAKRKIDLRFVPGVTFTNPSIATVGLTEQQAKEKGYDVKTSVLPLDAVPRALVNHETTGVYKLVVNAQTQKLIGAHIVSENAGDVIYAATLAVQFGLTIEDLTDSFAPYLTMAEGLKLAAL-TFDKDV 539          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_YERE8 (Soluble pyridine nucleotide transhydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=sthA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.198e-27
Identity = 72/190 (37.89%), Postives = 110/190 (57.89%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T+GLGL+KIG+E D  G + VN  + T +  VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+ +  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTSGLGLEKIGLEADSRGLLKVNSMYQTALSHVYAVGDVIGYPSLASAAYDQGRIAAQAMIKGEANTHLIEDIPTGIYTIPEISSVGKTEQDLTAMKVPYEVGRAQFKHLARAQIVGMDTGSLKILFHRETKQILGIHCFGERAAEIIHIGQAIMEQKGEGNTIEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_YERPY (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=sthA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.395e-27
Identity = 71/190 (37.37%), Postives = 110/190 (57.89%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T+GLGL+ IG+E D  G + VN  + T +  VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+++  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAVGDVIGYPSLASAAYDQGRIAAQAMIKGEANVHLIEDIPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIVGMDTGSLKILFHRETKQILGIHCFGERAAEIIHIGQAIMEQKGEGNTLEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_YERPS (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pseudotuberculosis GN=sthA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.395e-27
Identity = 71/190 (37.37%), Postives = 110/190 (57.89%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T+GLGL+ IG+E D  G + VN  + T +  VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+++  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAVGDVIGYPSLASAAYDQGRIAAQAMIKGEANVHLIEDIPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIVGMDTGSLKILFHRETKQILGIHCFGERAAEIIHIGQAIMEQKGEGNTLEYFVNTTFNYPTMAEAYRVAAL 459          
The following BLAST results are available for this feature:
BLAST of CX046963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
DLDH_MYCTU9.533e-3140.00Dihydrolipoyl dehydrogenase OS=Mycobacterium tuber... [more]
DLDH_MYCBO9.533e-3140.00Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis... [more]
DLDH1_PSEPU5.231e-2936.41Dihydrolipoyl dehydrogenase OS=Pseudomonas putida ... [more]
MERA_BACCE1.522e-2836.08Mercuric reductase OS=Bacillus cereus GN=merA PE=1... [more]
DLDH1_PSEAE4.428e-2835.71Dihydrolipoyl dehydrogenase OS=Pseudomonas aerugin... [more]
MERA_STAES5.784e-2836.60Mercuric reductase OS=Staphylococcus epidermidis (... [more]
MERA_STAAU5.784e-2836.60Mercuric reductase OS=Staphylococcus aureus GN=mer... [more]
STHA_YERE82.198e-2737.89Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPY6.395e-2737.37Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPS6.395e-2737.37Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C07-F14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046963 ID=CX046963; Name=CX046963; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTAGCTCAAGTCAATGTATCTCTCAATTATTATTTTGCGCATC
AAAACATAACAAAAGAAACCCAAGTTATTCCATCATCATATAAACATATA
AATGAGGAAAAACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGGACAA
TTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTCAAAC
AAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTTGTCG
TGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGATGTGC
ATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATGGCCA
GGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATGAACC
CCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTCCTTC
AGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAATTTCC
CCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTTCCCA
ACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTATCATA
GTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACCCCAT
CCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCCAATC
GCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTATCCG
TCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCAGCGG
TGAATGGAGTCCGGCCAG
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