CX046963

Overview
NameCX046963
Unique NameCX046963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_PSEE4 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas entomophila (strain L48) GN=sthA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.430e-26
Identity = 65/188 (34.57%), Postives = 104/188 (55.32%), Query Frame = -3
Query:  262 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI---ARVCHAHPTMSEALKEAA 816
            GRT  T  LGL+ IG++ +  G+I V++ + T++P +Y  GDVI  P LA  A + G +    +         D VP  +YT PE++S+GK E+++ +  V Y VGK  F + +RA+   + +G++KIL  +ET +ILGVH     A E++H     +N      ++         +PTM+EA + AA
Sbjct:  269 GRTGNTDRLGLENIGIKVNSRGQIEVDQAYRTSVPNIYGAGDVIGWPSLASAAHDQGRSAAGSIVDNGSWRFVDDVPTGIYTIPEISSIGKNEQELTQAKVPYEVGKAFFKSMARAQIAGEPQGMLKILFHRETLEILGVHCFGYQASEIVHIGQAIMNQPGEQNNLKYFVNTTFNYPTMAEAYRVAA 456          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_CITK8 (Soluble pyridine nucleotide transhydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=sthA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.430e-26
Identity = 71/190 (37.37%), Postives = 108/190 (56.84%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T +P +YA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALGNIGLETDSRGQLKVNSMYQTALPHIYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_ECOSM (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.174e-26
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEANAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_ECOL6 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O6 GN=sthA PE=3 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 3.174e-26
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEANAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_ECO81 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O81 (strain ED1a) GN=sthA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.174e-26
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEANAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_SHIFL (Soluble pyridine nucleotide transhydrogenase OS=Shigella flexneri GN=sthA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_SHIB3 (Soluble pyridine nucleotide transhydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=sthA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = -3
Query:  259 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 816
            GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  270 GRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_PSEPW (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain W619) GN=sthA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 65/188 (34.57%), Postives = 104/188 (55.32%), Query Frame = -3
Query:  262 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI---ARVCHAHPTMSEALKEAA 816
            GRT  T  LGL+ IG++ +  G+I V+E + T++P +Y  GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E+++ +  V Y VGK  F + +RA+   + +G++KIL  +ET +ILGVH     A E++H     +N      ++         +PTM+EA + AA
Sbjct:  269 GRTGNTDKLGLENIGIKVNSRGQIEVDEAYRTSVPNIYGAGDVIGWPSLASAAHDQGRSAAGSIVDNGSWRFVNDVPTGIYTIPEISSIGKNEQELTQAKVPYEVGKAFFKSMARAQIAGEPQGMLKILFHRETLEILGVHCFGYQASEIVHIGQAVMNQPGELNNLKYFVNTTFNYPTMAEAYRVAA 456          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_PSEPK (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain KT2440) GN=sthA PE=3 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 65/188 (34.57%), Postives = 103/188 (54.79%), Query Frame = -3
Query:  262 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI---ARVCHAHPTMSEALKEAA 816
            GRT  T  LGL+ IG++ +  G+I V+E + T +P +Y  GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E+++ +  V Y VGK  F + +RA+   + +G++KIL  +ET +ILGVH     A E++H     +N      ++         +PTM+EA + AA
Sbjct:  269 GRTGNTDKLGLENIGIKVNSRGQIEVDEAYRTTVPNIYGAGDVIGWPSLASAAHDQGRSAAGSIVDNGSWRFVNDVPTGIYTIPEISSIGKNEQELTQAKVPYEVGKAFFKSMARAQIAGEPQGMLKILFHRETLEILGVHCFGYQASEIVHIGQAIMNQPGEQNNLKYFVNTTFNYPTMAEAYRVAA 456          
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: STHA_PSEP1 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=sthA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.413e-26
Identity = 65/188 (34.57%), Postives = 103/188 (54.79%), Query Frame = -3
Query:  262 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI---ARVCHAHPTMSEALKEAA 816
            GRT  T  LGL+ IG++ +  G+I V+E + T +P +Y  GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E+++ +  V Y VGK  F + +RA+   + +G++KIL  +ET +ILGVH     A E++H     +N      ++         +PTM+EA + AA
Sbjct:  269 GRTGNTDKLGLENIGIKVNSRGQIEVDEAYRTTVPNIYGAGDVIGWPSLASAAHDQGRSAAGSIVDNGSWRFVNDVPTGIYTIPEISSIGKNEQELTQAKVPYEVGKAFFKSMARAQIAGEPQGMLKILFHRETLEILGVHCFGYQASEIVHIGQAIMNQPGEQNNLKYFVNTTFNYPTMAEAYRVAA 456          
The following BLAST results are available for this feature:
BLAST of CX046963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
STHA_PSEE42.430e-2634.57Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_CITK82.430e-2637.37Soluble pyridine nucleotide transhydrogenase OS=Ci... [more]
STHA_ECOSM3.174e-2637.89Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOL63.174e-2637.89Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO813.174e-2637.89Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_SHIFL5.413e-2637.89Soluble pyridine nucleotide transhydrogenase OS=Sh... [more]
STHA_SHIB35.413e-2637.89Soluble pyridine nucleotide transhydrogenase OS=Sh... [more]
STHA_PSEPW5.413e-2634.57Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEPK5.413e-2634.57Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEP15.413e-2634.57Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C07-F14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046963 ID=CX046963; Name=CX046963; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTAGCTCAAGTCAATGTATCTCTCAATTATTATTTTGCGCATC
AAAACATAACAAAAGAAACCCAAGTTATTCCATCATCATATAAACATATA
AATGAGGAAAAACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGGACAA
TTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTCAAAC
AAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTTGTCG
TGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGATGTGC
ATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATGGCCA
GGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATGAACC
CCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTCCTTC
AGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAATTTCC
CCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTTCCCA
ACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTATCATA
GTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACCCCAT
CCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCCAATC
GCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTATCCG
TCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCAGCGG
TGAATGGAGTCCGGCCAG
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