CX046950

Overview
NameCX046950
Unique NameCX046950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.890e-16
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  669 AFQLYESGIF-TGRCGTS-LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 890
            +FQ Y SG++    C  S LDH V AVGYG+E G D+W+VKNSW +SWG+ GYI+M RN        CGIA  ASY
Sbjct:  249 SFQFYSSGVYYEPSCSPSYLDHAVLAVGYGSEGGQDFWLVKNSWATSWGDAGYIKMSRN----RNNNCGIATVASY 320          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.292e-15
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = -1
Query:  669 FQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 887
            F++Y+SG++T   CGTS   ++H V AVGYG ENG  YW++KNSWG+ WG+ GY +ME          CGIA  ASY
Sbjct:  287 FRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMG-----KNMCGIATCASY 358          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CATL_SARPE (Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.292e-15
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = -1
Query:  669 AFQLYESGIFTG-RCGT-SLDHGVTAVGYGT-ENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 890
            +FQLY  G++    C   +LDHGV  VGYGT E+G DYW+VKNSWG++WGE GYI+M RN       +CGIA  +SY
Sbjct:  264 SFQLYSEGVYNEPECDEQNLDHGVLVVGYGTDESGMDYWLVKNSWGTTWGEQGYIKMARN----QNNQCGIATASSY 336          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: ERVC_TABDI (Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.687e-15
Identity = 44/68 (64.71%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  684 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIA 887
            FQ Y SGIF+G CGT L+HGVT VGY     A+YWIV+NSWG  WGE GYIRM R V G   G CGIA
Sbjct:  139 FQQYSSGIFSGPCGTKLNHGVTIVGYQ----ANYWIVRNSWGRYWGEKGYIRMLR-VGG--CGLCGIA 199          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.877e-15
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = -1
Query:  669 AFQLYESGIF-TGRCGTS-LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 890
            +FQ Y +G++    C +S LDH V AVGYG+E G D+W+VKNSW +SWGE GYI+M RN        CGIA +A Y
Sbjct:  248 SFQSYYTGVYYEPSCSSSQLDHAVLAVGYGSEGGQDFWLVKNSWATSWGESGYIKMARN----RNNNCGIATDACY 319          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.410e-15
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  669 AFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 890
            +FQLY +G++     +S  LDHGV AVG GT+NG DY+IVKNSWG SWG  GYI M RN        CGI+  ASY
Sbjct:  263 SFQLYTAGVYYEPACSSEDLDHGVLAVGMGTDNGEDYYIVKNSWGPSWGLNGYIHMARN----KDNNCGISTMASY 334          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.410e-15
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = -1
Query:  669 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 887
            FQ Y+SG+F G CGTSL+H VTA+GY    G D  I    WG+ WGE GYIRM R+V+ + +G CGIA++  Y
Sbjct:  140 FQYYKSGVFNGPCGTSLNHAVTAIGY----GQDSIIYPKKWGAKWGEAGYIRMARDVSSS-SGICGIAIDPLY 207          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.372e-15
Identity = 41/74 (55.41%), Postives = 48/74 (64.86%), Query Frame = -1
Query:  672 FQLYESGIFTGRCGTSL--DHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEAS 887
            F +Y SGI+  +  + L  +H V AVGYGT+ G DYWIVKNSWG+ WGE GYIRM RN        CGIA  AS
Sbjct:  249 FMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGTYWGERGYIRMARNRG----NMCGIASLAS 318          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.428e-14
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = -1
Query:  669 FQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 887
            F+LY+SG++T   CGT+   ++H V AVGYG E+G  YW++KNSWG+ WG+ GY +ME          CG+A  ASY
Sbjct:  285 FRLYKSGVYTSDHCGTTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDEGYFKMEMG-----KNMCGVATCASY 356          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.865e-14
Identity = 40/76 (52.63%), Postives = 48/76 (63.16%), Query Frame = -1
Query:  669 FQLYESGIFTGRCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 887
            F LY  GI+ G   TS   ++H V  VGYG+ +G DYWI KNSWG  WGE GYI ++RN  G L G CG+   ASY
Sbjct:  280 FHLYTGGIYDGENCTSPYGINHFVLLVGYGSADGVDYWIAKNSWGFDWGEDGYIWIQRN-TGNLLGVCGMNYFASY 354          
The following BLAST results are available for this feature:
BLAST of CX046950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
CYSP2_HOMAM9.890e-1653.95Digestive cysteine proteinase 2 OS=Homarus america... [more]
ORYC_ORYSJ1.292e-1550.65Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CATL_SARPE1.292e-1554.55Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1[more]
ERVC_TABDI1.687e-1564.71Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=... [more]
CYSP1_HOMAM2.877e-1552.63Digestive cysteine proteinase 1 OS=Homarus america... [more]
CYSP3_DICDI6.410e-1555.26Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
BROM2_ANACO6.410e-1553.42Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
CATLL_FASHE8.372e-1555.41Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CYSP2_MAIZE1.428e-1448.05Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
P34_SOYBN1.865e-1452.63P34 probable thiol protease OS=Glycine max PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11B12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11B12-D24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046950 ID=CX046950; Name=CX046950; organism=Citrus sinensis; type=EST; length=890bp
TTTTTTTTTTTTTTTTCGTTAAATATCAATTCATAAAAGCCTCCGCTGAA
TGATGCCAGGGATTTGGTGGAGGACATTGGAAATAGATAACAACAATTTG
TTTGTGCATTGTTCGGATTCAACGCAAATAGATAACTTACAACGCTATAT
ACAAAACCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTA
CATTAACGTTTGAAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAA
ACTCATTCACAAGCACGAATATCTTCATCCTCCCTTCGGCCTTCCACTGC
TCTTACAGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTCC
ATGAGCCCAGTAAGGTTTAGCAGGGGTGCGTCGCAATGCCCTCACTCCCA
ATGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGATG
GGATAGTCATGTGGGCAGCAGCTATAGTGGTCATCACAGCAGGTGGCAGC
CTCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGA
CACAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACACA
GCAGGAGGCTTTGTTGGAGATGGAGGAGACGGTCCGGGGTTGGGAGGATT
TTGGCCTTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTGC
CCGTGAGAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCACCCTCT
CCCCAGCTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCATT
TTCTGTGCCATATCCAACAGCAGTAACACCATGGTCCAGAGATGTCCCAC
ATCTTCCCGTAAATATACCCGATTCATATAACTGGAATGC
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