CX046950

Overview
NameCX046950
Unique NameCX046950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.256e-14
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = -1
Query:  669 AFQLYESGIF-TGRCGTS-LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 890
            +FQ Y+SGI+    C +  LDHGV  VGYG E G  YWIVKNSWG  WG+ GYI M ++        CGIA  ASY
Sbjct:  144 SFQFYQSGIYYEPDCSSEDLDHGVLVVGYGFEGGKKYWIVKNSWGEKWGDKGYIYMAKD----RKNHCGIATAASY 215          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.209e-13
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = -1
Query:  669 FQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 887
            F+ Y+SG++    CG +   ++H V AVGYG ENG  YW++KNSWG+ WGE GY +ME          CG+A  ASY
Sbjct:  281 FKQYKSGVYASTECGDTPMDVNHAVLAVGYGVENGTPYWLIKNSWGADWGEDGYFKMEMG-----KNMCGVATCASY 352          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CATS_CANFA (Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.209e-13
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  669 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 890
            +F LY SG++    C  +++HGV  VGYG  NG DYW+VKNSWG ++G+ GYIRM RN        CGIA   SY
Sbjct:  258 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGNLNGKDYWLVKNSWGLNFGDQGYIRMARNSG----NHCGIASYPSY 328          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  669 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 890
            +F LY SG++    C  +++HGV  VGYG  NG +YW+VKNSWG ++GE GYIRM RN        CGIA   SY
Sbjct:  258 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG----NHCGIASFPSY 328          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = -1
Query:  669 AFQLYESGIFTG-RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 890
            +F  Y+SG++    C  +++HGV  VGYGT +G DYW+VKNSWG ++G+ GYIRM RN        CGIA   SY
Sbjct:  267 SFFFYKSGVYDDPSCTGNVNHGVLVVGYGTLDGKDYWLVKNSWGLNFGDQGYIRMARN----NKNHCGIASYCSY 337          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.594e-13
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = -1
Query:  669 YESGIF--TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 878
            Y  GIF  +   G +L HGV  VGYG ENG  YWI+KN+WG+ WGE GYIR+ R+        CG+   ASY
Sbjct:  253 YGGGIFDDSSCLGDNLHHGVNVVGYGIENGQKYWIIKNTWGADWGESGYIRLIRDT----DHSCGVEKMASY 320          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13
Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = -1
Query:  687 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGI 890
            AFQLY+ GIF G CG   DH VTA+GYG     D    KNSWG +WGE GYI+++R  +G   G CG+
Sbjct:  141 AFQLYKGGIFNGPCGYKNDHAVTAIGYGKAQLLD----KNSWGPNWGEKGYIKIKR-ASGKSEGTCGV 203          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = -1
Query:  669 FQLYESGIFTGR-CGTSLD---HGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 887
            F +Y+SG+++ + C  + D   H V AVGYG +NG  YWIVKNSWGS WGE GY  +ER         CG+A  ASY
Sbjct:  257 FLMYKSGVYSSKSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSQWGENGYFLIERG-----KNMCGLAACASY 328          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  669 AFQLYESGIFTG-RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 890
            +F LY++G++    C  +++HGV  VGYG  +G DYW+VKNSWG  +G+ GYIRM RN        CGIA   SY
Sbjct:  258 SFFLYKTGVYYDPSCTQNVNHGVLVVGYGNLDGKDYWLVKNSWGLHFGDQGYIRMARNSG----NHCGIANYPSY 328          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CATK_CHICK (Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = -1
Query:  669 AFQLYESGIF--TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 890
            +FQ Y  G++  TG    +++H V AVGYG + G  +WI+KNSWG+ WG  GY+ + RN+  T    CGIA  AS+
Sbjct:  260 SFQFYSRGVYYDTGCNPENINHAVLAVGYGAQKGTKHWIIKNSWGTEWGNKGYVLLARNMKQT----CGIANLASF 331          
The following BLAST results are available for this feature:
BLAST of CX046950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
CATL1_CHICK9.256e-1452.63Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CYSP3_SOLLC1.209e-1346.75Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CATS_CANFA1.209e-1350.67Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1[more]
CATS_HUMAN2.062e-1350.67Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CATS_MOUSE3.517e-1349.33Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CATLL_PHACE4.594e-1350.00Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]
MEX2_JACME7.836e-1352.94Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATH_MOUSE7.836e-1349.35Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CATS_BOVIN1.746e-1248.00Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CATK_CHICK1.746e-1244.74Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11B12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11B12-D24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046950 ID=CX046950; Name=CX046950; organism=Citrus sinensis; type=EST; length=890bp
TTTTTTTTTTTTTTTTCGTTAAATATCAATTCATAAAAGCCTCCGCTGAA
TGATGCCAGGGATTTGGTGGAGGACATTGGAAATAGATAACAACAATTTG
TTTGTGCATTGTTCGGATTCAACGCAAATAGATAACTTACAACGCTATAT
ACAAAACCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTA
CATTAACGTTTGAAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAA
ACTCATTCACAAGCACGAATATCTTCATCCTCCCTTCGGCCTTCCACTGC
TCTTACAGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTCC
ATGAGCCCAGTAAGGTTTAGCAGGGGTGCGTCGCAATGCCCTCACTCCCA
ATGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGATG
GGATAGTCATGTGGGCAGCAGCTATAGTGGTCATCACAGCAGGTGGCAGC
CTCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGA
CACAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACACA
GCAGGAGGCTTTGTTGGAGATGGAGGAGACGGTCCGGGGTTGGGAGGATT
TTGGCCTTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTGC
CCGTGAGAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCACCCTCT
CCCCAGCTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCATT
TTCTGTGCCATATCCAACAGCAGTAACACCATGGTCCAGAGATGTCCCAC
ATCTTCCCGTAAATATACCCGATTCATATAACTGGAATGC
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