CX046945

Overview
NameCX046945
Unique NameCX046945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: TYPA_HELPJ (GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori J99 GN=typA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.430e-26
Identity = 66/161 (40.99%), Postives = 95/161 (59.01%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 644
            NIRN++VIAHVDHGK+TL D L++ +G  ++    D R+ D+   E ERGITI S   ++YY+ T                 IN+ID+PGH DF  EV   L++ DG L++VD  EGV  QT+ V+++AL   I P++ VNK+D+   E     +E +  F
Sbjct:    3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLEKERGITILSKNTAIYYKDTK----------------INIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIVVVNKIDKPAAEPDRVVDEVFDLF 147          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_NITSB (GTP-binding protein lepA OS=Nitratiruptor sp. (strain SB155-2) GN=lepA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.985e-25
Identity = 64/144 (44.44%), Postives = 87/144 (60.42%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            NIRN S+IAH+DHGKSTL D L+   G I      D ++ DT   E ERGITIK+  + L Y+            + G EY++NLID+PGHVDFS EV+ +L  ++GAL+VVD  +GV  QT   +  AL   +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLADRLIQECGAIEDRKMSD-QVMDTMDIEKERGITIKAQSVRLTYK------------KDGKEYILNLIDTPGHVDFSYEVSRSLASSEGALLVVDASQGVEAQTIANVYIALENDLELIPVINKID 133          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_DESPS (GTP-binding protein lepA OS=Desulfotalea psychrophila GN=lepA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.333e-24
Identity = 63/144 (43.75%), Postives = 85/144 (59.03%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            NIRN S+IAH+DHGKSTL D ++   G+I      D ++ D    E ERGITIKS  + L Y   D           G EY++NL+D+PGHVDFS EV+ AL   +GAL++VD  +GV  QT   L  A+   +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLADRMIQECGVITARDFQD-QLLDNMDIERERGITIKSQTVCLPYTAKD-----------GKEYILNLVDTPGHVDFSYEVSRALTSCEGALLIVDAAQGVEAQTLANLYLAMENDLEIIPVINKID 134          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_SULDN (GTP-binding protein lepA OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=lepA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.741e-24
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            NIRN S+IAH+DHGKSTL D ++   G ++    G  +M DT   E ERGITIK+  + L Y             + G  Y++NLID+PGHVDFS EV+ +L  +DGAL++VD  +GV  QT   +  A+   +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLADRIIQECGSVSDRELGK-QMMDTMDIEKERGITIKAQSVRLDYV------------KDGEHYILNLIDTPGHVDFSYEVSKSLASSDGALLIVDAAQGVEAQTIANVYLAMENNLTLIPVINKID 133          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_CLOPS (GTP-binding protein lepA OS=Clostridium perfringens (strain SM101 / Type A) GN=lepA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.274e-24
Identity = 63/149 (42.28%), Postives = 87/149 (58.39%), Query Frame = 3
Query:  147 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            MD K  IRN S++AH+DHGKSTL D L+   G + Q    + ++ DT + E ERGITIKS    L Y+              G EY++NLID+PGHVDF+ EV+ +L   +GA++VVD  +G+  QT      AL   +  V  +NK+D
Sbjct:    1 MDKKKYIRNFSIVAHIDHGKSTLADRLLEKTGTLTQREM-EQQVLDTMELEKERGITIKSQAARLIYK-----------RENGEEYILNLIDTPGHVDFTYEVSRSLAACEGAILVVDATQGIQAQTLANCYLALDNDLEIVPVINKVD 137          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_CLOPE (GTP-binding protein lepA OS=Clostridium perfringens GN=lepA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.274e-24
Identity = 63/149 (42.28%), Postives = 87/149 (58.39%), Query Frame = 3
Query:  147 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            MD K  IRN S++AH+DHGKSTL D L+   G + Q    + ++ DT + E ERGITIKS    L Y+              G EY++NLID+PGHVDF+ EV+ +L   +GA++VVD  +G+  QT      AL   +  V  +NK+D
Sbjct:    1 MDKKKYIRNFSIVAHIDHGKSTLADRLLEKTGTLTQREM-EQQVLDTMELEKERGITIKSQAARLIYK-----------RENGEEYILNLIDTPGHVDFTYEVSRSLAACEGAILVVDATQGIQAQTLANCYLALDNDLEIVPVINKVD 137          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_CLOP1 (GTP-binding protein lepA OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=lepA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.274e-24
Identity = 63/149 (42.28%), Postives = 87/149 (58.39%), Query Frame = 3
Query:  147 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            MD K  IRN S++AH+DHGKSTL D L+   G + Q    + ++ DT + E ERGITIKS    L Y+              G EY++NLID+PGHVDF+ EV+ +L   +GA++VVD  +G+  QT      AL   +  V  +NK+D
Sbjct:    1 MDKKKYIRNFSIVAHIDHGKSTLADRLLEKTGTLTQREM-EQQVLDTMELEKERGITIKSQAARLIYK-----------RENGEEYILNLIDTPGHVDFTYEVSRSLAACEGAILVVDATQGIQAQTLANCYLALDNDLEIVPVINKVD 137          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_BRAJA (GTP-binding protein lepA OS=Bradyrhizobium japonicum GN=lepA PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.970e-24
Identity = 62/145 (42.76%), Postives = 88/145 (60.69%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVA-AAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            NIRN S++AH+DHGKSTL D L+    G+  +E+AG  ++ D+   E ERGITIK+  + L Y   D           G +Y+ NL+D+PGHVDF+ EV+ +L   +G+L+VVD  +GV  QT   + QAL      V  +NK+D
Sbjct:    8 NIRNFSIVAHIDHGKSTLADRLIQMTGGLTDREMAGKEQVLDSMDIERERGITIKAQTVRLAYRAKD-----------GKDYIFNLMDTPGHVDFAYEVSRSLAACEGSLLVVDASQGVEAQTLANVYQALDNNHEIVPVLNKVD 141          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_ALKMQ (GTP-binding protein lepA OS=Alkaliphilus metalliredigens (strain QYMF) GN=lepA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.970e-24
Identity = 61/148 (41.22%), Postives = 88/148 (59.46%), Query Frame = 3
Query:  150 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            D +  IRN S+IAH+DHGKSTL D L+   G+I+Q      ++ D  + E ERGITIK   I L Y+  D           G +Y +NLID+PGHVDF+ EV+ +L   +GA++VVD  +G+  QT   +  AL + +  +  +NK+D
Sbjct:    4 DRQRKIRNFSIIAHIDHGKSTLADRLIERTGLISQREM-QAQVLDNMELERERGITIKLQSIRLIYKAKD-----------GQDYYLNLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTMANVYLALEQNLEIIPVINKID 139          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_NITHX (GTP-binding protein lepA OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=lepA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.879e-24
Identity = 62/145 (42.76%), Postives = 89/145 (61.38%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIA-QEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            NIRN S++AH+DHGKSTL D L+   G ++ +E+AG  ++ D+   E ERGITIK+  + L Y   D           G +Y+ NL+D+PGHVDF+ EV+ +L   +G+L+VVD  +GV  QT   + QAL      V  +NK+D
Sbjct:   15 NIRNFSIVAHIDHGKSTLADRLIQMTGGLSDREMAGKEQVLDSMDIERERGITIKAQTVRLNYHAKD-----------GKDYIFNLMDTPGHVDFAYEVSRSLAACEGSLLVVDASQGVEAQTLANVYQALDNNHEIVPVLNKVD 148          
The following BLAST results are available for this feature:
BLAST of CX046945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TYPA_HELPJ2.430e-2640.99GTP-binding protein TypA/BipA homolog OS=Helicobac... [more]
LEPA_NITSB5.985e-2544.44GTP-binding protein lepA OS=Nitratiruptor sp. (str... [more]
LEPA_DESPS1.333e-2443.75GTP-binding protein lepA OS=Desulfotalea psychroph... [more]
LEPA_SULDN1.741e-2442.36GTP-binding protein lepA OS=Sulfurimonas denitrifi... [more]
LEPA_CLOPS2.274e-2442.28GTP-binding protein lepA OS=Clostridium perfringen... [more]
LEPA_CLOPE2.274e-2442.28GTP-binding protein lepA OS=Clostridium perfringen... [more]
LEPA_CLOP12.274e-2442.28GTP-binding protein lepA OS=Clostridium perfringen... [more]
LEPA_BRAJA2.970e-2442.76GTP-binding protein lepA OS=Bradyrhizobium japonic... [more]
LEPA_ALKMQ2.970e-2441.22GTP-binding protein lepA OS=Alkaliphilus metallire... [more]
LEPA_NITHX3.879e-2442.76GTP-binding protein lepA OS=Nitrobacter hamburgens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11B09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11B09-D18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046945 ID=CX046945; Name=CX046945; organism=Citrus sinensis; type=EST; length=818bp
GTTCACTCCTTTCTCTCTATTTTTACGGATTGAGACATTTGCAGTCTCTC
TCGCTCGCCGCCTTCGAAAGAAATACTGTTGTTGTTGGTAATATTTGAGA
ATCAGTCAAGATGGTGAAGTTCACAGCAGAAGAGCTCCGGCGTATTATGG
ACTTCAAACATAACATCCGCAATATGTCTGTTATTGCCCATGTTGATCAT
GGGAAGTCAACCCTTACCGACTCTCTTGTGGCTGCTGCTGGTATTATCGC
CCAAGAAGTTGCTGGCGATGTCCGTATGACAGATACTCGTCAGGATGAAG
CTGAGCGTGGTATTACAATCAAGTCTACTGGTATATCTCTCTACTACGAG
ATGACTGATGCGGCTTTGAAGAGCTTCAAGGGAGAGCGTCAAGGGAATGA
ATACCTCATCAACCTTATTGATTCCCCTGGGCACGTCGATTTCTCATCTG
AGGTTACAGCTGCCCTTCGTATCACTGATGGTGCACTTGTGGTCGTAGAC
TGCATTGAAGGTGTTTGTGTCCAAACAGAAACTGTGCTTAGACAAGCCCT
GGGTGAAAGGATTAGGCCAGTCTTGACTGTGAACAAGATGGACAGGTGCT
TCCTTGAGCTTCAGGTTGACGGTGAAGAGGCTTACCAGACTTTCCAGAAA
GTGATTGAGAATGCTAATGTCATTATGGCTACCTATGAAGATCCACTCCT
TGGCGATGTTCAGGTTTACCCTGAAAAGGGAACAGTTGCTTTCTCTGCTG
GTTTGCATGGTTGGGCTTTTACCTTGACAAATTTTGCTAAGATGTATGCA
TCCAAGTTCGGAGTTGAT
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