CX046945

Overview
NameCX046945
Unique NameCX046945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: EF2_SULTO (Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA PE=3 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 4.259e-47
Identity = 98/219 (44.75%), Postives = 142/219 (64.84%), Query Frame = 3
Query:  123 TAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDV-QVYPEKGTVAFSAGLHGWAFTL 776
            T E++  +M     +RN+ +IAHVDHGK+T +D+L+AAAGII+Q+VAG+    D    E +RGIT+K+  ISLY+E+            +G  Y+INLID+PGHVDFS  VT +LRI DG++VVVD +EG+  QTETVLRQ+L ER+RP+L +NK+DR   EL++  +E  +    +I   N ++  Y +P   D  ++ PE G V F +    W F++
Sbjct:    6 TVEQVLSLMKDITRVRNIGIIAHVDHGKTTTSDTLLAAAGIISQKVAGEALALDYLSVEQQRGITVKAANISLYHEI------------EGKGYVINLIDTPGHVDFSGRVTRSLRILDGSIVVVDAVEGIMTQTETVLRQSLEERVRPILFINKVDRLVKELKLSPQEIQKKLIDMIVEINNLIEMYAEPEYKDAWKIKPELGNVVFGSAKDKWGFSV 212          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: EF2_METS5 (Elongation factor 2 OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=fusA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.266e-47
Identity = 96/219 (43.84%), Postives = 142/219 (64.84%), Query Frame = 3
Query:  123 TAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDV-QVYPEKGTVAFSAGLHGWAFTL 776
            T+E++  +M  +  +RN+ +IAHVDHGK+T +D L+AA+GII+ +VAG+    D    E +RGIT+K+  +SLY+E+            +G  Y+INLID+PGHVDFS  VT +LR+ DG++VVVD +EGV  QTETVLRQ+L ER+RP+L VNK+DR   EL++  +E  Q    +I+  N ++  Y +P L +   + P  G V F +    W F++
Sbjct:    6 TSEQVLSLMKDRTRVRNIGIIAHVDHGKTTTSDQLLAASGIISPKVAGEALALDYLSVEQQRGITVKAANVSLYHEV------------EGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVVDSVEGVMTQTETVLRQSLEERVRPILFVNKVDRLVKELKLGPQEMMQKLMDIIKEVNNLINIYAEPELKEKWAINPTLGNVVFGSAKDRWGFSI 212          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 7.266e-47
Identity = 101/227 (44.49%), Postives = 142/227 (62.56%), Query Frame = 3
Query:  117 KFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIM--ATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAK 791
            K   E+  R+MD    IRN+++ AHVDHGK+TLTD+L+A AG+I+++ AG     DT +DE ERGITI +  +S+ +E             +G+++LINLID+PGHVDF  +VT A+R  DGALVVVD +EG   QTETV+RQAL E ++P L +NK+DR   ELQ   EE  +    VI + N ++   T E   + D  V  E GTVAF + L+ W  ++ +  +
Sbjct:    5 KKIVEQCERLMDNPEQIRNIAIAAHVDHGKTTLTDNLLAGAGMISEDTAGQQLAMDTEEDEQERGITIDAANVSMTHEY------------EGDDHLINLIDTPGHVDFGGDVTRAMRAVDGALVVVDAVEGAMPQTETVVRQALREGVKPTLFINKVDRLISELQEGPEEMQERLLSVIGDVNELIRGMTEEKDDIEDWTVSVEDGTVAFGSALYKWGVSMPSMQR 219          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.266e-47
Identity = 101/227 (44.49%), Postives = 142/227 (62.56%), Query Frame = 3
Query:  117 KFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIM--ATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAK 791
            K   E+  R+MD    IRN+++ AHVDHGK+TLTD+L+A AG+I+++ AG     DT +DE ERGITI +  +S+ +E             +G+++LINLID+PGHVDF  +VT A+R  DGALVVVD +EG   QTETV+RQAL E ++P L +NK+DR   ELQ   EE  +    VI + N ++   T E   + D  V  E GTVAF + L+ W  ++ +  +
Sbjct:    5 KKIVEQCERLMDNPEQIRNIAIAAHVDHGKTTLTDNLLAGAGMISEDTAGQQLAMDTEEDEQERGITIDAANVSMTHEY------------EGDDHLINLIDTPGHVDFGGDVTRAMRAVDGALVVVDAVEGAMPQTETVVRQALREGVKPTLFINKVDRLISELQEGPEEMQERLLSVIGDVNELIRGMTEEKDDIEDWTVSVEDGTVAFGSALYKWGVSMPSMQR 219          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: EF2_NATPD (Elongation factor 2 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=fusA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.619e-46
Identity = 103/228 (45.18%), Postives = 137/228 (60.09%), Query Frame = 3
Query:  117 KFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVI---MATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAK 791
            K   +E  R+MD    IRN+++ AHVDHGK+TLTD+L+A AG+I+ E AG+    DT +DE ERGITI +  +S+ +E  D              +LINLID+PGHVDF  +VT A+R  DGALVVVD +EG   QTETVLRQAL E ++P L +NK+DR   ELQ   EE  Q    VI + N +   M    D +  D  V  E GTV F + L+ W  ++ +  +
Sbjct:    5 KKIVQECERLMDEPEQIRNIAIAAHVDHGKTTLTDNLLAGAGMISDETAGEQLAMDTEEDEQERGITIDAANVSMTHEYED------------ENHLINLIDTPGHVDFGGDVTRAMRAVDGALVVVDAVEGAMPQTETVLRQALREGVKPTLFINKVDRLISELQEGPEEMQQRLTGVIGDVNELIRGMTEEMDDINEDWTVSVEDGTVGFGSALYKWGVSMPSMQR 220          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: EF2_METMT (Elongation factor 2 OS=Methanococcoides methylutens GN=fusA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.114e-46
Identity = 101/226 (44.69%), Postives = 143/226 (63.27%), Query Frame = 3
Query:  117 KFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENAN-VIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAK 791
            K   E +  +M     IRN+++IAH+DHGK+TL+D+L+A AG+I++++AG     D+ ++E ERGITI S  +S+ +E  D             EYLINLID+PGHVDF  +VT A+R  DGA+VV+D +EG   QTETVLRQAL E +RPVL +NK+DR   ELQVD +E      K+I++ N +I    E+      +V   +GTVAF + L+ WA ++    K
Sbjct:    5 KKMVERVTALMSNPVMIRNIAIIAHIDHGKTTLSDNLLAGAGMISKDLAGRQLFMDSDEEEQERGITIDSANVSMVHEFED------------EEYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVIDAVEGTMPQTETVLRQALKEHVRPVLFINKVDRLINELQVDAQEMQIRLGKLIDHVNKLIKGMNEERYNQGWRVDAAEGTVAFGSALYNWAISVPMMQK 218          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: EF2_METB6 (Elongation factor 2 OS=Methanoregula boonei (strain 6A8) GN=fusA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.114e-46
Identity = 100/226 (44.25%), Postives = 144/226 (63.72%), Query Frame = 3
Query:  117 KFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENAN-VIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAK 791
            K T E +  +M    +IRN+ ++AH+DHGK+TL+D+L+A AGII++E+AG     D+  +E  RGITI ++ +S+ +E+            +G +YLIN+ID+PGHVDF  +VT A+R  DGA+V+VD +EG   QTETVLRQAL E++RPVL +NK+DR   EL+VD  E      KVI+  N +I    ED      ++   KGTVAF + L+ WA ++    K
Sbjct:    5 KKTVERVVELMKDPKHIRNIGIVAHIDHGKTTLSDNLLAGAGIISEELAGKQLFMDSDAEEQARGITIDASNVSMVHEV------------EGQDYLINMIDTPGHVDFGGDVTRAMRAVDGAVVLVDAVEGTMPQTETVLRQALKEQVRPVLFINKVDRLVNELKVDETEMQIRLGKVIDKVNKLIKGMNEDLYNNGWKLDASKGTVAFGSALYNWAVSVPYMKK 218          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: EF2_METBU (Elongation factor 2 OS=Methanococcoides burtonii (strain DSM 6242) GN=fusA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.761e-46
Identity = 100/226 (44.25%), Postives = 143/226 (63.27%), Query Frame = 3
Query:  117 KFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENAN-VIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAK 791
            K   E +  +M     IRN+ ++AH+DHGK+TL+D+L+A AG+I++E+AG     D+  +E ERGITI S+ +S+ +E             +G EYLINLID+PGHVDF  +VT A+R  DGA+VV+D +EG   QTETVLRQAL E ++PVL +NK+DR   ELQVD +E      K+I++ N +I    E+      +V   +GTVAF + L+ WA ++    K
Sbjct:    5 KKMVERVTALMSNPLMIRNIGIVAHIDHGKTTLSDNLLAGAGMISKELAGRQLFMDSDAEEQERGITIDSSNVSMVHEY------------EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVIDAVEGTMPQTETVLRQALKEHVKPVLFINKVDRLINELQVDDQEMQIRLGKLIDHVNKLIKGMNEERYNAGWRVDAAEGTVAFGSALYNWAISVPMMKK 218          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: EF2_SULSO (Elongation factor 2 OS=Sulfolobus solfataricus GN=fusA PE=1 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 6.151e-46
Identity = 94/219 (42.92%), Postives = 139/219 (63.47%), Query Frame = 3
Query:  123 TAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDV-QVYPEKGTVAFSAGLHGWAFTL 776
            T E++  +M  +  +RN+ +IAHVDHGK+T +D+L+AA+GII+ +VAG+    D    E +RGIT+K+  ISLY+E             +G  Y+INLID+PGHVDFS  VT +LR+ DG++VVVD +EG+  QTETVLRQ+L ER+RP+L +NK+DR   EL++  +E       +I   N ++  Y +P   +   + P+ G V F +    W F+L
Sbjct:    6 TVEQVLSLMKDRTRVRNIGIIAHVDHGKTTTSDTLLAASGIISPKVAGEALALDYLNVEQQRGITVKAANISLYHEA------------EGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVVDAVEGIMTQTETVLRQSLEERVRPILFINKVDRLVKELKLSPQEMLNRLLDIIRQVNNLIDMYGEPEFKEKWMINPQAGNVIFGSAKDKWGFSL 212          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: EF2_SULIY (Elongation factor 2 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=fusA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.151e-46
Identity = 94/219 (42.92%), Postives = 139/219 (63.47%), Query Frame = 3
Query:  123 TAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDV-QVYPEKGTVAFSAGLHGWAFTL 776
            T E++  +M  +  +RN+ +IAHVDHGK+T +D+L+AA+GII+ +VAG+    D    E +RGIT+K+  ISLY+E             +G  Y+INLID+PGHVDFS  VT +LR+ DG++VVVD +EG+  QTETVLRQ+L ER+RP+L +NK+DR   EL++  +E       +I   N ++  Y +P   +   + P+ G V F +    W F+L
Sbjct:    6 TVEQVLSLMKDRTRVRNIGIIAHVDHGKTTTSDTLLAASGIISPKVAGEALALDYLSVEQQRGITVKAANISLYHEA------------EGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVVDAVEGIMTQTETVLRQSLEERVRPILFINKVDRLVKELKLSPQEMLNRLLDIIRQVNNLIDMYGEPEFKEKWMINPQAGNVIFGSAKDKWGFSL 212          
The following BLAST results are available for this feature:
BLAST of CX046945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF2_SULTO4.259e-4744.75Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA... [more]
EF2_METS57.266e-4743.84Elongation factor 2 OS=Metallosphaera sedula (stra... [more]
EF2_HALSA7.266e-4744.49Elongation factor 2 OS=Halobacterium salinarium GN... [more]
EF2_HALS37.266e-4744.49Elongation factor 2 OS=Halobacterium salinarum (st... [more]
EF2_NATPD1.619e-4645.18Elongation factor 2 OS=Natronomonas pharaonis (str... [more]
EF2_METMT2.114e-4644.69Elongation factor 2 OS=Methanococcoides methyluten... [more]
EF2_METB62.114e-4644.25Elongation factor 2 OS=Methanoregula boonei (strai... [more]
EF2_METBU2.761e-4644.25Elongation factor 2 OS=Methanococcoides burtonii (... [more]
EF2_SULSO6.151e-4642.92Elongation factor 2 OS=Sulfolobus solfataricus GN=... [more]
EF2_SULIY6.151e-4642.92Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11B09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11B09-D18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046945 ID=CX046945; Name=CX046945; organism=Citrus sinensis; type=EST; length=818bp
GTTCACTCCTTTCTCTCTATTTTTACGGATTGAGACATTTGCAGTCTCTC
TCGCTCGCCGCCTTCGAAAGAAATACTGTTGTTGTTGGTAATATTTGAGA
ATCAGTCAAGATGGTGAAGTTCACAGCAGAAGAGCTCCGGCGTATTATGG
ACTTCAAACATAACATCCGCAATATGTCTGTTATTGCCCATGTTGATCAT
GGGAAGTCAACCCTTACCGACTCTCTTGTGGCTGCTGCTGGTATTATCGC
CCAAGAAGTTGCTGGCGATGTCCGTATGACAGATACTCGTCAGGATGAAG
CTGAGCGTGGTATTACAATCAAGTCTACTGGTATATCTCTCTACTACGAG
ATGACTGATGCGGCTTTGAAGAGCTTCAAGGGAGAGCGTCAAGGGAATGA
ATACCTCATCAACCTTATTGATTCCCCTGGGCACGTCGATTTCTCATCTG
AGGTTACAGCTGCCCTTCGTATCACTGATGGTGCACTTGTGGTCGTAGAC
TGCATTGAAGGTGTTTGTGTCCAAACAGAAACTGTGCTTAGACAAGCCCT
GGGTGAAAGGATTAGGCCAGTCTTGACTGTGAACAAGATGGACAGGTGCT
TCCTTGAGCTTCAGGTTGACGGTGAAGAGGCTTACCAGACTTTCCAGAAA
GTGATTGAGAATGCTAATGTCATTATGGCTACCTATGAAGATCCACTCCT
TGGCGATGTTCAGGTTTACCCTGAAAAGGGAACAGTTGCTTTCTCTGCTG
GTTTGCATGGTTGGGCTTTTACCTTGACAAATTTTGCTAAGATGTATGCA
TCCAAGTTCGGAGTTGAT
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