CX046945

Overview
NameCX046945
Unique NameCX046945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_RALSO (GTP-binding protein lepA OS=Ralstonia solanacearum GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 65/165 (39.39%), Postives = 91/165 (55.15%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 656
            NIRN S+IAH+DHGKSTL D ++   G ++     + ++ D+   E ERGITIK+   +L Y+  D           G  Y +NLID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+   +  V  +NK+D        D + A Q  + VI
Sbjct:    3 NIRNFSIIAHIDHGKSTLADRIIQLCGGLSDREM-EAQVLDSMDIEKERGITIKAQTAALSYKARD-----------GKVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTAIELGVEVVPVLNKIDL----PAADPDSAIQEIEDVI 151          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_RALPJ (GTP-binding protein lepA OS=Ralstonia pickettii (strain 12J) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 65/165 (39.39%), Postives = 91/165 (55.15%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 656
            NIRN S+IAH+DHGKSTL D ++   G ++     + ++ D+   E ERGITIK+   +L Y+  D           G  Y +NLID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+   +  V  +NK+D        D + A Q  + VI
Sbjct:    3 NIRNFSIIAHIDHGKSTLADRIIQLCGGLSDREM-EAQVLDSMDIEKERGITIKAQTAALSYKARD-----------GKVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTAIELGVEVVPVLNKIDL----PAADPDNAIQEIEDVI 151          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_PSEPW (GTP-binding protein lepA OS=Pseudomonas putida (strain W619) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 64/170 (37.65%), Postives = 96/170 (56.47%), Query Frame = 3
Query:  150 DFKHNIRNMSVIAHVDHGKSTLTDSLVA-AAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 656
            D  H IRN S+IAH+DHGKSTL D  +    G+ A+E+  + ++ D+   E ERGITIK+  ++L+Y+  D           G  Y +N ID+PGHVDF+ EV+ +L   +GAL+VVD  +GV  Q+      A+ + +  +  +NKMD      Q D +      +K+I
Sbjct:    3 DLSH-IRNFSIIAHIDHGKSTLADRFIQMCGGLSAREM--EAQVLDSMDLERERGITIKAHSVTLHYKALD-----------GKTYQLNFIDTPGHVDFTYEVSRSLAACEGALLVVDAGQGVEAQSVANCYTAIEQGLEVMPVLNKMDL----PQADPDRVKDEIEKII 154          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_PSEPK (GTP-binding protein lepA OS=Pseudomonas putida (strain KT2440) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 64/170 (37.65%), Postives = 96/170 (56.47%), Query Frame = 3
Query:  150 DFKHNIRNMSVIAHVDHGKSTLTDSLVA-AAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 656
            D  H IRN S+IAH+DHGKSTL D  +    G+ A+E+  + ++ D+   E ERGITIK+  ++L+Y+  D           G  Y +N ID+PGHVDF+ EV+ +L   +GAL+VVD  +GV  Q+      A+ + +  +  +NKMD      Q D +      +K+I
Sbjct:    3 DLSH-IRNFSIIAHIDHGKSTLADRFIQMCGGLSAREM--EAQVLDSMDLERERGITIKAHSVTLHYKAQD-----------GKTYQLNFIDTPGHVDFTYEVSRSLAACEGALLVVDAGQGVEAQSVANCYTAIEQGLEVMPVLNKMDL----PQADPDRVKDEIEKII 154          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_PROA2 (GTP-binding protein lepA OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 60/143 (41.96%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  165 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            IRN  +IAH+DHGKSTL D L+   G + Q      ++ D    E ERGITIKS  I ++++  D           G  Y++NLID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT   L  A+   +  +  +NK+D
Sbjct:   11 IRNFCIIAHIDHGKSTLADRLLEVTGTL-QHNQMTAQVLDDMDLERERGITIKSHAIQMHHKAGD-----------GRAYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVEAQTIANLYLAVEAGLEIIPVINKID 141          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_LACDB (GTP-binding protein lepA OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 56/154 (36.36%), Postives = 90/154 (58.44%), Query Frame = 3
Query:  132 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            +L ++ D++ +IRN S++AHVDHGKST+ D ++     +++    + +M D    E +RGITIK   + + Y   D           G +Y+ +LID+PGHVDFS EV+ +L   +GA++VVD  +GV  QT +    AL   +  +  +NK+D
Sbjct:    2 DLEKLKDYQKHIRNFSIVAHVDHGKSTIADRILELTDTVSKRQLKN-QMLDDMPLERQRGITIKMNSVQVKYHAND-----------GEDYIFHLIDTPGHVDFSYEVSRSLAACEGAVLVVDASQGVQAQTLSNTYLALENDLEILPVLNKID 143          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_LACDA (GTP-binding protein lepA OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 56/154 (36.36%), Postives = 90/154 (58.44%), Query Frame = 3
Query:  132 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            +L ++ D++ +IRN S++AHVDHGKST+ D ++     +++    + +M D    E +RGITIK   + + Y   D           G +Y+ +LID+PGHVDFS EV+ +L   +GA++VVD  +GV  QT +    AL   +  +  +NK+D
Sbjct:    2 DLEKLKDYQKHIRNFSIVAHVDHGKSTIADRILELTDTVSKRQLKN-QMLDDMPLERQRGITIKMNSVQVKYHAND-----------GEDYIFHLIDTPGHVDFSYEVSRSLAACEGAVLVVDASQGVQAQTLSNTYLALENDLEILPVLNKID 143          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_LACBA (GTP-binding protein lepA OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 59/154 (38.31%), Postives = 89/154 (57.79%), Query Frame = 3
Query:  132 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            +L ++ + +  IRN S++AH+DHGKSTL D ++     I++    D ++ D    E ERGITIK   + L Y   D           G++Y  +LID+PGHVDFS EV+ +L   +GA++VVD  +GV  QT   +  AL + +  V  +NK+D
Sbjct:    2 DLEKLKNHQKYIRNFSIVAHIDHGKSTLADRILELTDTISKRDMQD-QVLDDMDLERERGITIKLNAVELTYHAKD-----------GHDYEFHLIDTPGHVDFSYEVSRSLAACEGAVLVVDAAQGVEAQTLANVYLALDDDLEIVPVINKID 143          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_GRAFK (GTP-binding protein lepA OS=Gramella forsetii (strain KT0803) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 58/144 (40.28%), Postives = 85/144 (59.03%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            NIRN  +IAH+DHGKSTL D L+   G + +    + ++ D+   E ERGITIKS  I + Y              +G E+++NLID+PGHVDFS EV+ ++   +GAL+VVD  + +  QT + L  AL   +  +  +NK+D
Sbjct:    3 NIRNFCIIAHIDHGKSTLADRLLDFTGAVTEREKQE-QLLDSMDLERERGITIKSHAIQMDYV------------HEGEEFVLNLIDTPGHVDFSYEVSRSIAACEGALLVVDAAQSIQAQTISNLYLALENDLEIIPVLNKVD 133          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_EUBR3 (GTP-binding protein lepA OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 58/143 (40.56%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  165 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            IRN  +IAH+DHGKSTL D ++   G +        ++ D    E ERGITIKS  + + Y   D           G EY+ NLID+PGHVDF+ EV+ +L   DGA++VVD  +GV  QT   +  AL   +     +NK+D
Sbjct:    8 IRNFCIIAHIDHGKSTLADRIIEKTGTLTSREM-QAQVLDNMDLERERGITIKSQAVRIIYTAKD-----------GEEYIFNLIDTPGHVDFNYEVSRSLAACDGAILVVDAAQGVEAQTLANVYLALDHDLDVFPVINKVD 138          
The following BLAST results are available for this feature:
BLAST of CX046945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEPA_RALSO1.380e-2139.39GTP-binding protein lepA OS=Ralstonia solanacearum... [more]
LEPA_RALPJ1.380e-2139.39GTP-binding protein lepA OS=Ralstonia pickettii (s... [more]
LEPA_PSEPW1.380e-2137.65GTP-binding protein lepA OS=Pseudomonas putida (st... [more]
LEPA_PSEPK1.380e-2137.65GTP-binding protein lepA OS=Pseudomonas putida (st... [more]
LEPA_PROA21.380e-2141.96GTP-binding protein lepA OS=Prosthecochloris aestu... [more]
LEPA_LACDB1.380e-2136.36GTP-binding protein lepA OS=Lactobacillus delbruec... [more]
LEPA_LACDA1.380e-2136.36GTP-binding protein lepA OS=Lactobacillus delbruec... [more]
LEPA_LACBA1.380e-2138.31GTP-binding protein lepA OS=Lactobacillus brevis (... [more]
LEPA_GRAFK1.380e-2140.28GTP-binding protein lepA OS=Gramella forsetii (str... [more]
LEPA_EUBR31.380e-2140.56GTP-binding protein lepA OS=Eubacterium rectale (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11B09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11B09-D18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046945 ID=CX046945; Name=CX046945; organism=Citrus sinensis; type=EST; length=818bp
GTTCACTCCTTTCTCTCTATTTTTACGGATTGAGACATTTGCAGTCTCTC
TCGCTCGCCGCCTTCGAAAGAAATACTGTTGTTGTTGGTAATATTTGAGA
ATCAGTCAAGATGGTGAAGTTCACAGCAGAAGAGCTCCGGCGTATTATGG
ACTTCAAACATAACATCCGCAATATGTCTGTTATTGCCCATGTTGATCAT
GGGAAGTCAACCCTTACCGACTCTCTTGTGGCTGCTGCTGGTATTATCGC
CCAAGAAGTTGCTGGCGATGTCCGTATGACAGATACTCGTCAGGATGAAG
CTGAGCGTGGTATTACAATCAAGTCTACTGGTATATCTCTCTACTACGAG
ATGACTGATGCGGCTTTGAAGAGCTTCAAGGGAGAGCGTCAAGGGAATGA
ATACCTCATCAACCTTATTGATTCCCCTGGGCACGTCGATTTCTCATCTG
AGGTTACAGCTGCCCTTCGTATCACTGATGGTGCACTTGTGGTCGTAGAC
TGCATTGAAGGTGTTTGTGTCCAAACAGAAACTGTGCTTAGACAAGCCCT
GGGTGAAAGGATTAGGCCAGTCTTGACTGTGAACAAGATGGACAGGTGCT
TCCTTGAGCTTCAGGTTGACGGTGAAGAGGCTTACCAGACTTTCCAGAAA
GTGATTGAGAATGCTAATGTCATTATGGCTACCTATGAAGATCCACTCCT
TGGCGATGTTCAGGTTTACCCTGAAAAGGGAACAGTTGCTTTCTCTGCTG
GTTTGCATGGTTGGGCTTTTACCTTGACAAATTTTGCTAAGATGTATGCA
TCCAAGTTCGGAGTTGAT
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