CX046945

Overview
NameCX046945
Unique NameCX046945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_LACJO (GTP-binding protein lepA OS=Lactobacillus johnsonii GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 53/154 (34.42%), Postives = 90/154 (58.44%), Query Frame = 3
Query:  132 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            +++++ D++ +IRN S++AH+DHGKST+ D ++     +++    + ++ D    E +RGITIK   + + Y   D           G  Y+ +LID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+ + +  +  +NK+D
Sbjct:    2 DIKKLQDYQKHIRNFSIVAHIDHGKSTIADRILELTDTVSERQMKN-QLLDDMPLERQRGITIKLNSVEVKYHAKD-----------GETYIFHLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVQAQTLANTYLAIDDDLEILPVINKID 143          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_LACGA (GTP-binding protein lepA OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 53/154 (34.42%), Postives = 90/154 (58.44%), Query Frame = 3
Query:  132 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            +++++ D++ +IRN S++AH+DHGKST+ D ++     +++    + ++ D    E +RGITIK   + + Y   D           G  Y+ +LID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+ + +  +  +NK+D
Sbjct:    2 DIKKLQDYQKHIRNFSIVAHIDHGKSTIADRILELTDTVSERQMKN-QLLDDMPLERQRGITIKLNSVEVKYHAKD-----------GETYIFHLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVQAQTLANTYLAIDDDLEILPVINKID 143          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_FUSNN (GTP-binding protein lepA OS=Fusobacterium nucleatum subsp. nucleatum GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 56/144 (38.89%), Postives = 87/144 (60.42%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            N RN S+IAH+DHGKST+ D L+   G +++    + ++ D+   E E+GITIK+  ++L+Y+            + G EY +NLID+PGHVDF  EV+ +L   +GAL+VVD  +GV  QT   +  A+   +  +  +NK+D
Sbjct:    9 NKRNFSIIAHIDHGKSTIADRLLEYTGTVSERDMKE-QILDSMDLEREKGITIKAQAVTLFYKA-----------KNGEEYELNLIDTPGHVDFIYEVSRSLAACEGALLVVDAAQGVEAQTLANVYLAIENNLEILPIINKID 140          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_FRATW (GTP-binding protein lepA OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            NIRN S+IAH+DHGKSTL+D  +     +++    + ++ D+   E ERGITIK+  ++L Y   D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+ + +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLSDRFIQVCNGLSEREMKE-QVLDSMDIERERGITIKAQSVTLDYTARD-----------GQTYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQTVANCYTAIEQNLEVIPILNKID 134          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_FRATT (GTP-binding protein lepA OS=Francisella tularensis subsp. tularensis GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            NIRN S+IAH+DHGKSTL+D  +     +++    + ++ D+   E ERGITIK+  ++L Y   D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+ + +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLSDRFIQVCNGLSEREMKE-QVLDSMDIERERGITIKAQSVTLDYTARD-----------GQTYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQTVANCYTAIEQNLEVIPILNKID 134          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_FRATN (GTP-binding protein lepA OS=Francisella tularensis subsp. novicida (strain U112) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            NIRN S+IAH+DHGKSTL+D  +     +++    + ++ D+   E ERGITIK+  ++L Y   D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+ + +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLSDRFIQVCNGLSEREMKE-QVLDSMDIERERGITIKAQSVTLDYTARD-----------GQTYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQTVANCYTAIEQNLEVIPILNKID 134          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_FRATM (GTP-binding protein lepA OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            NIRN S+IAH+DHGKSTL+D  +     +++    + ++ D+   E ERGITIK+  ++L Y   D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+ + +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLSDRFIQVCNGLSEREMKE-QVLDSMDIERERGITIKAQSVTLDYTARD-----------GQTYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQTVANCYTAIEQNLEVIPILNKID 134          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_FRAT1 (GTP-binding protein lepA OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            NIRN S+IAH+DHGKSTL+D  +     +++    + ++ D+   E ERGITIK+  ++L Y   D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+ + +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLSDRFIQVCNGLSEREMKE-QVLDSMDIERERGITIKAQSVTLDYTARD-----------GQTYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQTVANCYTAIEQNLEVIPILNKID 134          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_DESRM (GTP-binding protein lepA OS=Desulfotomaculum reducens (strain MI-1) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 57/146 (39.04%), Postives = 85/146 (58.22%), Query Frame = 3
Query:  156 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            ++ IRN  +IAH+DHGKSTL D ++   G ++Q    + ++ D    E ERGITIK   + L++   D           G EY +NLID+PGHVDF+ EV+ +L   +GAL+VVD  +G+  QT   +  AL   +  +  +NK+D
Sbjct:    5 QNRIRNFCIIAHIDHGKSTLADRILEETGALSQREMTE-QVLDKMDLERERGITIKLQAVRLFHRAED-----------GQEYQLNLIDTPGHVDFTYEVSRSLAACEGALLVVDASQGIEAQTLANVYLALENDLEIIPVINKID 138          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_DEIRA (GTP-binding protein lepA OS=Deinococcus radiodurans GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 61/143 (42.66%), Postives = 81/143 (56.64%), Query Frame = 3
Query:  165 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            IRN S+IAHVDHGKSTL D ++   G + +    D  + DT + E ERGITIKST I L Y               G  Y+ NLID+PGHVDF+ EV+ +L   +G L++VD  +GV  QT      A+   +  V  +NK+D
Sbjct:   14 IRNFSIIAHVDHGKSTLADRILEQLGAMGERDKRDQTL-DTLELERERGITIKSTPIRLEYT-----------RENGEGYVFNLIDTPGHVDFNYEVSRSLAACEGVLLLVDASQGVEAQTIVNAYLAIDNNLEIVPVINKID 144          
The following BLAST results are available for this feature:
BLAST of CX046945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEPA_LACJO1.802e-2134.42GTP-binding protein lepA OS=Lactobacillus johnsoni... [more]
LEPA_LACGA1.802e-2134.42GTP-binding protein lepA OS=Lactobacillus gasseri ... [more]
LEPA_FUSNN1.802e-2138.89GTP-binding protein lepA OS=Fusobacterium nucleatu... [more]
LEPA_FRATW1.802e-2139.58GTP-binding protein lepA OS=Francisella tularensis... [more]
LEPA_FRATT1.802e-2139.58GTP-binding protein lepA OS=Francisella tularensis... [more]
LEPA_FRATN1.802e-2139.58GTP-binding protein lepA OS=Francisella tularensis... [more]
LEPA_FRATM1.802e-2139.58GTP-binding protein lepA OS=Francisella tularensis... [more]
LEPA_FRAT11.802e-2139.58GTP-binding protein lepA OS=Francisella tularensis... [more]
LEPA_DESRM1.802e-2139.04GTP-binding protein lepA OS=Desulfotomaculum reduc... [more]
LEPA_DEIRA1.802e-2142.66GTP-binding protein lepA OS=Deinococcus radioduran... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_11B09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11B09-D18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046945 ID=CX046945; Name=CX046945; organism=Citrus sinensis; type=EST; length=818bp
GTTCACTCCTTTCTCTCTATTTTTACGGATTGAGACATTTGCAGTCTCTC
TCGCTCGCCGCCTTCGAAAGAAATACTGTTGTTGTTGGTAATATTTGAGA
ATCAGTCAAGATGGTGAAGTTCACAGCAGAAGAGCTCCGGCGTATTATGG
ACTTCAAACATAACATCCGCAATATGTCTGTTATTGCCCATGTTGATCAT
GGGAAGTCAACCCTTACCGACTCTCTTGTGGCTGCTGCTGGTATTATCGC
CCAAGAAGTTGCTGGCGATGTCCGTATGACAGATACTCGTCAGGATGAAG
CTGAGCGTGGTATTACAATCAAGTCTACTGGTATATCTCTCTACTACGAG
ATGACTGATGCGGCTTTGAAGAGCTTCAAGGGAGAGCGTCAAGGGAATGA
ATACCTCATCAACCTTATTGATTCCCCTGGGCACGTCGATTTCTCATCTG
AGGTTACAGCTGCCCTTCGTATCACTGATGGTGCACTTGTGGTCGTAGAC
TGCATTGAAGGTGTTTGTGTCCAAACAGAAACTGTGCTTAGACAAGCCCT
GGGTGAAAGGATTAGGCCAGTCTTGACTGTGAACAAGATGGACAGGTGCT
TCCTTGAGCTTCAGGTTGACGGTGAAGAGGCTTACCAGACTTTCCAGAAA
GTGATTGAGAATGCTAATGTCATTATGGCTACCTATGAAGATCCACTCCT
TGGCGATGTTCAGGTTTACCCTGAAAAGGGAACAGTTGCTTTCTCTGCTG
GTTTGCATGGTTGGGCTTTTACCTTGACAAATTTTGCTAAGATGTATGCA
TCCAAGTTCGGAGTTGAT
back to top