CX046945

Overview
NameCX046945
Unique NameCX046945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_DECAR (GTP-binding protein lepA OS=Dechloromonas aromatica (strain RCB) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 66/165 (40.00%), Postives = 91/165 (55.15%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 656
            +IRN S+IAH+DHGKSTL D ++   G ++     + ++ D+   E ERGITIK+   +L Y+  D           G  Y +NLID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      AL   +  V  +NK+D        D E A Q  + VI
Sbjct:    3 HIRNFSIIAHIDHGKSTLADRIIHLCGGLSDREM-EAQVLDSMDIERERGITIKAQTAALSYKARD-----------GKVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTALELDVEVVPVLNKIDL----PSADPENARQEIEDVI 151          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_CITK8 (GTP-binding protein lepA OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 59/144 (40.97%), Postives = 85/144 (59.03%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            NIRN S+IAH+DHGKSTL+D ++   G ++     + ++ D+   E ERGITIK+  ++L Y+  D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+   +  V  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM-EAQVLDSMDLERERGITIKAQSVTLDYKAAD-----------GETYHLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKID 134          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_CHLL2 (GTP-binding protein lepA OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 56/142 (39.44%), Postives = 81/142 (57.04%), Query Frame = 3
Query:  168 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            RN  +IAH+DHGKSTL D L+     + +      ++ D    E ERGITIKS  + + ++  D           G EY++NLID+PGHVDFS EV+ +L   +GAL++VD  +GV  QT   L  A+   +  +  +NK+D
Sbjct:   12 RNFCIIAHIDHGKSTLADRLLEVTHTLDRTQMSSAQVLDDMDLEKERGITIKSHAVQMKFKAED-----------GQEYILNLIDTPGHVDFSYEVSRSLAACEGALLIVDATQGVEAQTIANLYLAIEAGLEIIPVMNKID 142          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_BACV8 (GTP-binding protein lepA OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 63/144 (43.75%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  162 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            NIRN  +IAH+DHGKSTL D L+     I Q   G  +M D    E ERGITIKS  I + YE              G +Y++NLID+PGHVDFS EV+ ++   +GAL++VD  +GV  QT + L  AL   +  +  +NK D
Sbjct:    3 NIRNFCIIAHIDHGKSTLADRLLEFTKTI-QVTEG--QMLDDMDLEKERGITIKSHAIQMEYEYG------------GEKYVLNLIDTPGHVDFSYEVSRSIAACEGALLIVDASQGVQAQTISNLYMALEHDLEIIPVLNKCD 131          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_BACSU (GTP-binding protein lepA OS=Bacillus subtilis GN=lepA PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 57/149 (38.26%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  147 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            ++ +  IRN S+IAH+DHGKSTL D ++     I Q    + ++ D+   E ERGITIK   + L Y+  D           G EY+ +LID+PGHVDF+ EV+ +L   +GA++VVD  +G+  QT   +  AL   +  +  +NK+D
Sbjct:    8 LERQSRIRNFSIIAHIDHGKSTLADRILEKTSAITQREMKE-QLLDSMDLERERGITIKLNSVQLKYKAKD-----------GEEYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKID 144          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_BACLD (GTP-binding protein lepA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 57/143 (39.86%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  165 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            IRN S+IAH+DHGKSTL D ++     I Q    + ++ D+   E ERGITIK   + L Y+  D           G EY+ +LID+PGHVDF+ EV+ +L   +GA++VVD  +G+  QT   +  AL   +  +  +NK+D
Sbjct:   14 IRNFSIIAHIDHGKSTLADRILEKTAAITQREMKE-QLLDSMDLERERGITIKLNSVQLKYQAKD-----------GEEYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKID 144          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_BACHK (GTP-binding protein lepA OS=Bacillus thuringiensis subsp. konkukian GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 56/143 (39.16%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  165 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            IRN S+IAH+DHGKSTL D ++     + Q      ++ D+   E ERGITIK   + L Y+  D           G EY+++LID+PGHVDF+ EV+ +L   +GA++VVD  +G+  QT   +  AL   +  +  +NK+D
Sbjct:   13 IRNFSIIAHIDHGKSTLADRILEKTNALTQREM-KAQLLDSMDLERERGITIKLNAVQLNYKAKD-----------GEEYILHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNNLEILPVINKID 143          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_BACCZ (GTP-binding protein lepA OS=Bacillus cereus (strain ZK / E33L) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 56/143 (39.16%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  165 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            IRN S+IAH+DHGKSTL D ++     + Q      ++ D+   E ERGITIK   + L Y+  D           G EY+++LID+PGHVDF+ EV+ +L   +GA++VVD  +G+  QT   +  AL   +  +  +NK+D
Sbjct:   13 IRNFSIIAHIDHGKSTLADRILEKTNALTQREM-KAQLLDSMDLERERGITIKLNAVQLNYKAKD-----------GEEYILHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNNLEILPVINKID 143          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_BACCR (GTP-binding protein lepA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 56/143 (39.16%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  165 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            IRN S+IAH+DHGKSTL D ++     + Q      ++ D+   E ERGITIK   + L Y+  D           G EY+++LID+PGHVDF+ EV+ +L   +GA++VVD  +G+  QT   +  AL   +  +  +NK+D
Sbjct:   13 IRNFSIIAHIDHGKSTLADRILEKTNALTQREM-KAQLLDSMDLERERGITIKLNAVQLNYKAKD-----------GEEYILHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNNLEILPVINKID 143          
BLAST of CX046945 vs. ExPASy Swiss-Prot
Match: LEPA_BACCQ (GTP-binding protein lepA OS=Bacillus cereus (strain Q1) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 56/143 (39.16%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  165 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 593
            IRN S+IAH+DHGKSTL D ++     + Q      ++ D+   E ERGITIK   + L Y+  D           G EY+++LID+PGHVDF+ EV+ +L   +GA++VVD  +G+  QT   +  AL   +  +  +NK+D
Sbjct:   13 IRNFSIIAHIDHGKSTLADRILEKTNALTQREM-KAQLLDSMDLERERGITIKLNAVQLNYKAKD-----------GEEYILHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNNLEILPVINKID 143          
The following BLAST results are available for this feature:
BLAST of CX046945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEPA_DECAR1.802e-2140.00GTP-binding protein lepA OS=Dechloromonas aromatic... [more]
LEPA_CITK81.802e-2140.97GTP-binding protein lepA OS=Citrobacter koseri (st... [more]
LEPA_CHLL21.802e-2139.44GTP-binding protein lepA OS=Chlorobium limicola (s... [more]
LEPA_BACV81.802e-2143.75GTP-binding protein lepA OS=Bacteroides vulgatus (... [more]
LEPA_BACSU1.802e-2138.26GTP-binding protein lepA OS=Bacillus subtilis GN=l... [more]
LEPA_BACLD1.802e-2139.86GTP-binding protein lepA OS=Bacillus licheniformis... [more]
LEPA_BACHK1.802e-2139.16GTP-binding protein lepA OS=Bacillus thuringiensis... [more]
LEPA_BACCZ1.802e-2139.16GTP-binding protein lepA OS=Bacillus cereus (strai... [more]
LEPA_BACCR1.802e-2139.16GTP-binding protein lepA OS=Bacillus cereus (strai... [more]
LEPA_BACCQ1.802e-2139.16GTP-binding protein lepA OS=Bacillus cereus (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_11B09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11B09-D18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046945 ID=CX046945; Name=CX046945; organism=Citrus sinensis; type=EST; length=818bp
GTTCACTCCTTTCTCTCTATTTTTACGGATTGAGACATTTGCAGTCTCTC
TCGCTCGCCGCCTTCGAAAGAAATACTGTTGTTGTTGGTAATATTTGAGA
ATCAGTCAAGATGGTGAAGTTCACAGCAGAAGAGCTCCGGCGTATTATGG
ACTTCAAACATAACATCCGCAATATGTCTGTTATTGCCCATGTTGATCAT
GGGAAGTCAACCCTTACCGACTCTCTTGTGGCTGCTGCTGGTATTATCGC
CCAAGAAGTTGCTGGCGATGTCCGTATGACAGATACTCGTCAGGATGAAG
CTGAGCGTGGTATTACAATCAAGTCTACTGGTATATCTCTCTACTACGAG
ATGACTGATGCGGCTTTGAAGAGCTTCAAGGGAGAGCGTCAAGGGAATGA
ATACCTCATCAACCTTATTGATTCCCCTGGGCACGTCGATTTCTCATCTG
AGGTTACAGCTGCCCTTCGTATCACTGATGGTGCACTTGTGGTCGTAGAC
TGCATTGAAGGTGTTTGTGTCCAAACAGAAACTGTGCTTAGACAAGCCCT
GGGTGAAAGGATTAGGCCAGTCTTGACTGTGAACAAGATGGACAGGTGCT
TCCTTGAGCTTCAGGTTGACGGTGAAGAGGCTTACCAGACTTTCCAGAAA
GTGATTGAGAATGCTAATGTCATTATGGCTACCTATGAAGATCCACTCCT
TGGCGATGTTCAGGTTTACCCTGAAAAGGGAACAGTTGCTTTCTCTGCTG
GTTTGCATGGTTGGGCTTTTACCTTGACAAATTTTGCTAAGATGTATGCA
TCCAAGTTCGGAGTTGAT
back to top