CX046944

Overview
NameCX046944
Unique NameCX046944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length931
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EFG_HELPY (Elongation factor G OS=Helicobacter pylori GN=fusA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.061e-11
Identity = 59/192 (30.73%), Postives = 89/192 (46.35%), Query Frame = -2
Query:  232 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKG 759
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P+VE FG+S+ LR+AT G+      FDH+  +      P + A ++V    KRKG
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEV------PSNIAKEIV---EKRKG 692          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EFG_HELPS (Elongation factor G OS=Helicobacter pylori (strain Shi470) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.061e-11
Identity = 59/192 (30.73%), Postives = 89/192 (46.35%), Query Frame = -2
Query:  232 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKG 759
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P+VE FG+S+ LR+AT G+      FDH+  +      P + A ++V    KRKG
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEV------PSNIAKEIV---EKRKG 692          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EFG_HELPJ (Elongation factor G OS=Helicobacter pylori J99 GN=fusA PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 2.061e-11
Identity = 59/192 (30.73%), Postives = 89/192 (46.35%), Query Frame = -2
Query:  232 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKG 759
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P+VE FG+S+ LR+AT G+      FDH+  +      P + A ++V    KRKG
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEV------PSNIAKEIV---EKRKG 692          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EFG_HELPH (Elongation factor G OS=Helicobacter pylori (strain HPAG1) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.061e-11
Identity = 59/192 (30.73%), Postives = 89/192 (46.35%), Query Frame = -2
Query:  232 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKG 759
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P+VE FG+S+ LR+AT G+      FDH+  +      P + A ++V    KRKG
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEV------PSNIAKEIV---EKRKG 692          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EFG_HELPG (Elongation factor G OS=Helicobacter pylori (strain G27) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.061e-11
Identity = 59/192 (30.73%), Postives = 89/192 (46.35%), Query Frame = -2
Query:  232 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKG 759
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P+VE FG+S+ LR+AT G+      FDH+  +      P + A ++V    KRKG
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEV------PSNIAKEIV---EKRKG 692          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EFG_HELP2 (Elongation factor G OS=Helicobacter pylori (strain P12) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.061e-11
Identity = 59/192 (30.73%), Postives = 89/192 (46.35%), Query Frame = -2
Query:  232 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKG 759
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P+VE FG+S+ LR+AT G+      FDH+  +      P + A ++V    KRKG
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEV------PSNIAKEIV---EKRKG 692          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EFG_HELAH (Elongation factor G OS=Helicobacter acinonychis (strain Sheeba) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.061e-11
Identity = 59/192 (30.73%), Postives = 89/192 (46.35%), Query Frame = -2
Query:  232 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKG 759
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P+VE FG+S+ LR+AT G+      FDH+  +      P + A ++V    KRKG
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEV------PSNIAKEIV---EKRKG 692          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EFG_STRAW (Elongation factor G OS=Streptomyces avermitilis GN=fusA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.996e-11
Identity = 55/169 (32.54%), Postives = 77/169 (45.56%), Query Frame = -2
Query:  310 ETIGPNM-VVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHAD-----AIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHW 798
            ET GP    V+   G +   E   SV AG Q A + G LA   M G+   + D   H       A    G Q    A R        A P LLEP+  VE+  PE+++G +   LN +RG +    +R G  +  +K  +P+ E FG+   LR+ TSG+A     FD +
Sbjct:  532 ETDGPAYEFVNKVTGGRIPREYIPSVDAGAQEAMQFGILAGYEMTGVRVTLLDGAYHEVDSSELAFKIAGSQAFKEAAR-------KASPVLLEPMMAVEVTTPEESMGDVIGDLNSRRGQIQAMEERSGARV--VKGLVPLSEMFGYVGDLRSKTSGRASYSMQFDSY 691          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EFG1_BURTA (Elongation factor G 1 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=fusA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.996e-11
Identity = 55/184 (29.89%), Postives = 87/184 (47.28%), Query Frame = -2
Query:  259 KGVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-----DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHV--FEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQL 762
            KG ++L+EIK  V+          G +   K G LA   +  +   +      DV  + +A    G      A R        AKP LLEP+  VE++ PE+ +G +   L+ +RG V   E++   G  L  ++A +P+ E FG+S++LR+AT G+A     F H+    S+  E    A Q+
Sbjct:  527 KGYEFLDEIKGGVIPREFIPAVNKGIEETLKSGVLAGYPVVDVKVHLTFGSYHDVDSNENAFRMAGSMAFKEAMR-------RAKPVLLEPMMAVEVETPEEFMGNVMGDLSSRRGIVQGMEDIAGGGGKL--VRAEVPLAEMFGYSTSLRSATQGRATYTMEFKHYAETPSNVSEAVINAKQV 701          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EFG1_BURP1 (Elongation factor G 1 OS=Burkholderia pseudomallei (strain 1710b) GN=fusA1 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.831e-11
Identity = 55/184 (29.89%), Postives = 86/184 (46.74%), Query Frame = -2
Query:  259 KGVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-----DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHV--FEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQL 762
            KG ++L+EIK  V+          G +   K G LA   +  +   +      DV  + +A    G      A R        AKP LLEP+  VE++ PE  +G +   L+ +RG V   E++   G  L  ++A +P+ E FG+S++LR+AT G+A     F H+    S+  E    A Q+
Sbjct:  527 KGYEFLDEIKGGVIPREFIPAVNKGIEETLKSGVLAGYPVVDVKVHLTFGSYHDVDSNENAFRMAGSMAFKEAMR-------RAKPVLLEPMMAVEVETPEDFMGNVMGDLSSRRGIVQGMEDIAGGGGKL--VRAEVPLAEMFGYSTSLRSATQGRATYTMEFKHYAETPSNVSEAVINAKQI 701          
The following BLAST results are available for this feature:
BLAST of CX046944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
EFG_HELPY2.061e-1130.73Elongation factor G OS=Helicobacter pylori GN=fusA... [more]
EFG_HELPS2.061e-1130.73Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELPJ2.061e-1130.73Elongation factor G OS=Helicobacter pylori J99 GN=... [more]
EFG_HELPH2.061e-1130.73Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELPG2.061e-1130.73Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELP22.061e-1130.73Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELAH2.061e-1130.73Elongation factor G OS=Helicobacter acinonychis (s... [more]
EFG_STRAW5.996e-1132.54Elongation factor G OS=Streptomyces avermitilis GN... [more]
EFG1_BURTA5.996e-1129.89Elongation factor G 1 OS=Burkholderia thailandensi... [more]
EFG1_BURP17.831e-1129.89Elongation factor G 1 OS=Burkholderia pseudomallei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11B09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11B09-D18-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046944 ID=CX046944; Name=CX046944; organism=Citrus sinensis; type=EST; length=931bp
TTTTTTTTTTGATCAGAAAGTGAATGGAATAACAGAATTTGAACGTCCAA
ACTTAAATAAACAGAGGCTACAACAACAAACTCAGATAAGTCAACATTGT
TTCCTTCAAAGAAAAAAACAGAACAAAACCAAAGGCAGCAAAAAATGAAT
CTAGTCGCCAGCAATCGATAATGGCAAAAGCGCTTACAGCTTGTCTTCAT
ATTCAGAGAGGGGGGTCATCTGTTCCTTCAAACCCTTCCTCTTCCTAATA
TCCAAAACAAGCTGTGAAGCCTGGGATCCCGGCTCCAATGGATCAGATGA
CATCATGTCCCAGTGATCAAACACACATTGAGGGAATGCCTGTCCAGAGG
TTGCAGCTCTCAAAGTGCTGGAAAATCCAAAAGACTCAACGACCGGGAGG
TATGCCTTGATGTTATAAAGTGGGGTACCAGGTCTCTGCATCTCCTCAAA
AACGTGACCACGTTTCTGGTTAAGAACACTGTAAATACCACCAAGTGCCT
GTTCAGGAGCTTGGATTTCCACCAAGTAGACAGGCTCAAGAAGCCTTGGT
TTGGCTGTAAGCTGGGATGCATAAATGACCCTTCTAGCAGTTGGAATAAC
CTGGCCACCACCTCTGTGGATAGCATCGGCATGAAGAACCACATCACAAA
CTTCAAAGCAAATGCCCCTCATGTTTTCTTCAGCCAATGCACCTTCCTTT
GATGCCCACTGGAACCCAGCAACAACTGAATCCTTAATTTCATTCAAGTA
CTGAACTCCCTTGCACATATCCACAACCATGTTAGGACCAATGGTCTCAG
GACCAAAACACCAGATTTTCTTGGCAAGATCCTTGTCCCAACCAAATTCC
TCAGACAGAATCTTAGAACGAACCTTANGATCATCCCTTGGACCAATACG
ACCATCATCAATTGCCTCAGCAAGACCTTCC
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