CX046944
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 213.386 bits (542), Expect = 1.507e-54 Identity = 104/264 (39.39%), Postives = 156/264 (59.09%), Query Frame = -2 Query: 187 EGLAEAXXXXXXXXXXXXKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGLKEQMTPLSEYEDKL 930 +GLAE K + ++ WD A+ IW FGP+ GPN++VD + L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P ++SFGF + LR T GQAF VF HW ++ DPL+ A + ++ R+RKGL E ++ ++D + Sbjct: 694 KGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 1.968e-54 Identity = 104/264 (39.39%), Postives = 156/264 (59.09%), Query Frame = -2 Query: 187 EGLAEAXXXXXXXXXXXXKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGLKEQMTPLSEYEDKL 930 +GLAE K + ++ WD A+ IW FGP+ GPN++VD + L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P ++SFGF + LR T GQAF VF HW ++ DPL+ A + ++ R+RKGL E ++ ++D + Sbjct: 694 KGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 1.968e-54 Identity = 104/264 (39.39%), Postives = 156/264 (59.09%), Query Frame = -2 Query: 187 EGLAEAXXXXXXXXXXXXKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGLKEQMTPLSEYEDKL 930 +GLAE K + ++ WD A+ IW FGP+ GPN++VD + L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P ++SFGF + LR T GQAF VF HW ++ DPL+ A + ++ R+RKGL E ++ ++D + Sbjct: 693 KGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 956
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 1.968e-54 Identity = 104/264 (39.39%), Postives = 156/264 (59.09%), Query Frame = -2 Query: 187 EGLAEAXXXXXXXXXXXXKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGLKEQMTPLSEYEDKL 930 +GLAE K + ++ WD A+ IW FGP+ GPN++VD + L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P ++SFGF + LR T GQAF VF HW ++ DPL+ A + ++ R+RKGL E ++ ++D + Sbjct: 694 KGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 1.968e-54 Identity = 104/264 (39.39%), Postives = 156/264 (59.09%), Query Frame = -2 Query: 187 EGLAEAXXXXXXXXXXXXKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGLKEQMTPLSEYEDKL 930 +GLAE K + ++ WD A+ IW FGP+ GPN++VD + L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P ++SFGF + LR T GQAF VF HW ++ DPL+ A + ++ R+RKGL E ++ ++D + Sbjct: 694 KGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 5.360e-52 Identity = 101/245 (41.22%), Postives = 153/245 (62.45%), Query Frame = -2 Query: 187 SKILSEEFGWDKDLAKKIWCFGPETIGPNMV------VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQ------------ASQLVLDIRKRKGLKEQMTPLSEYEDKL 867 S+ + + WD ++ IW FGP+ G N++ D+ K V LN +K+ + GFQW ++EG L +E +R + F + DVVL + I+RGGGQ+IPTARRV Y+S LTA PRL+EPVY+VE+ AP +L IY +L ++RGHV +++ RPG+PLY ++A +PV++S GF + LR T GQA Q VFDHW ++ DPL+ + A ++ R+RKGL E ++ ++ ++ Sbjct: 728 SEFFQKNYDWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNV--LNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGLVEDVSTTRYFDQEM 970
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 3.604e-40 Identity = 87/224 (38.84%), Postives = 135/224 (60.27%), Query Frame = -2 Query: 199 RSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEY 870 R+KIL E+ GWD D A+ IW N++VD G+QYL EI+D +V GF+WA++ G LA+E MRG+ + D V+H D HRG Q++P + I+A+ L+A+P +LEP+ ++I+ +G + SVLN+ RG + + Q+ + ++A LPV+ESF S LRAA +G+ F F W M P S + +V +RK+KGLKE++ +++ Sbjct: 523 RAKILREKAGWDADEARGIWAIDDRFF--NLIVDRTSGIQYLREIRDYIVQGFRWATEAGPLAQEPMRGLKVVLTDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTILEPLMKLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPM------PESILADMVKQLRKKKGLKEEIPKPTDF 736
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 6.147e-40 Identity = 89/219 (40.64%), Postives = 130/219 (59.36%), Query Frame = -2 Query: 220 KVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQ 876 K R+K+L EE GW D A++IW N+ VD+ GVQ+L E+KD+++ GF+ A +EG LA E +RG+ + D ++H D HRG GQ+ P R IYA LTAKP LLEP+ ++I+AP + LG I +++ +KRG + + +Q+ + I A +PV E+F + LR AT+G+A F W + P S LV IR+RKGLK + Sbjct: 519 KQRAKVLREEAGWPTDQARRIWAIDENI---NVFVDLTTGVQHLREVKDTIIQGFRLAMREGPLAMEPVRGVKVILHDAIIHEDPAHRGPGQIYPAVRNAIYAGMLTAKPTLLEPIQKLDIKAPMEYLGNITTIITKKRGKILQVLQQGA--VARIIAEIPVAETFDLAEQLRGATAGKAIWGQEFSRWAPV------PDSMLLDLVRKIRERKGLKPE 726
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 6.147e-40 Identity = 87/224 (38.84%), Postives = 134/224 (59.82%), Query Frame = -2 Query: 199 RSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEY 870 R+KIL E+ GWD D A+ IW N++VD G+QYL EI+D +V GF+WA++ G LA+E +RG+ + D V+H D HRG Q++P + I+A+ L+AKP +LEP+ ++I+ +G + SVLN+ RG + + Q+ + ++A LPV+ESF S LRAA +G+ F F W + P S LV +RK+KGLKE++ +++ Sbjct: 523 RAKILREKAGWDTDEARGIWAIDDRYF--NVIVDKTSGIQYLREIRDYIVQGFRWATEAGPLAQEPIRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAMLSAKPTVLEPLLRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPV------PESMLLDLVKQLRKKKGLKEEIPKPTDF 736
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 3.051e-39 Identity = 86/224 (38.39%), Postives = 130/224 (58.04%), Query Frame = -2 Query: 199 RSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEY 870 R+KIL E+ GWD D A+ IW N++VD G+QYL EI+D +V GF+W+ + G LA+E MRG+ + D V+H D HRG Q++P + I+A+ L+A+P LLEP+ ++I+ +G + SVLN+ RG + + Q+ ++A LPV+ESF S LRAA +G+ F F W P S V +RK+KGLKE++ +++ Sbjct: 523 RAKILREKAGWDTDEARGIWAIDDRYF--NVIVDKTSGIQYLREIRDYIVQGFRWSMEAGPLAQEPMRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTLLEPLMRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQEYMAF--LRAELPVLESFNISDELRAAAAGKIFWSMQFARWAPF------PESMLGDFVKQLRKKKGLKEEIPKPTDF 736 The following BLAST results are available for this feature:
BLAST of CX046944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX046944 ID=CX046944; Name=CX046944; organism=Citrus sinensis; type=EST; length=931bpback to top |