CX046944

Overview
NameCX046944
Unique NameCX046944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length931
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EF2_METMP (Elongation factor 2 OS=Methanococcus maripaludis GN=fusA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.268e-26
Identity = 71/210 (33.81%), Postives = 115/210 (54.76%), Query Frame = -2
Query:  220 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQ 849
            E G +KD AKK+          NM+V+M +G+  L+E ++ ++ GF+   + G LA E ++G+   + D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+  +R AT G+      F  ++ + ++ L+P     ++   IR RKGLK +
Sbjct:  530 EAGLEKDQAKKVMSI----YNGNMIVNMTRGIVQLDEARELIIEGFKEGVRNGPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERVPNE-LQP-----KIAKQIRDRKGLKSE 727          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.962e-26
Identity = 77/252 (30.56%), Postives = 126/252 (50.00%), Query Frame = -2
Query:  229 SKILSEE---FGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYL-----------NEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRG---------GGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPL----------------EPGSQASQLVLDIRKRKGL 867
            SK+L EE    G  K+    I  FGP+ +GPN++ D  K ++             +++ + VV  FQ  + +G L  E ++GIC  +    +  D+              GQVI   +  I    L   PRL+  +Y  ++QA  + LG +Y V++++RG V +E  + GTP + +KA +PVVESFGF+  +   TSG A+PQ +F  ++M+  +P                 +  + A + +L++RKRKGL
Sbjct:  731 SKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTKKMRDFRRQSDETKLIPSDLSEYVVTAFQLITHQGPLCAEPVQGICVSIDQFDISDDSEDSKLLTINNPQIPGQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENPFWVPTTEEELEDLGELADRENIAKRYMLNVRKRKGL 982          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EF2_PYRKO (Elongation factor 2 OS=Pyrococcus kodakaraensis GN=fusA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.962e-26
Identity = 75/207 (36.23%), Postives = 109/207 (52.66%), Query Frame = -2
Query:  229 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGL 849
            E G D ++AK I     +    NM +D  KG+QYLNE+ D +V GF  A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   LNQ+RG +  +M++ G  +  I    PV E FGF+  +R ATSG+A      +H    +     P   A Q++  IR+RKGL
Sbjct:  524 ELGMDYEIAKGI----VDIYNGNMFLDNTKGIQYLNEVMDLLVDGFHQAMDEGPLAKEPVMKVIVRLHDAKIHEDNVHRGPAQIYPAIRSAIHCAMMKAGPVLYEPYQKVIINVPYEYMGAVSRELNQRRGQLI-DMRQEGEVMI-IIGEAPVAEMFGFAGAIRGATSGKAL--WTTEH----AGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EF2_PYRWO (Elongation factor 2 OS=Pyrococcus woesei GN=fusA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.868e-26
Identity = 72/208 (34.62%), Postives = 110/208 (52.88%), Query Frame = -2
Query:  229 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGSQASQLVLDIRKRKGL 849
            E G D D+A+ +     +    NM +D  KG+QYLNE+ D ++ GF  A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   ++Q+RG +  +M++ G  +  I A  PV E FGF+  +R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  524 ELGMDYDIARGV----VDIYNGNMFLDNTKGIQYLNEVMDLLIDGFHQAMDEGPLAKEPVMKVIVRLVDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGAVSREISQRRGQLI-DMRQEG-EVMTIIAEAPVAEMFGFAGAIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EF2_PYRFU (Elongation factor 2 OS=Pyrococcus furiosus GN=fusA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.868e-26
Identity = 72/208 (34.62%), Postives = 110/208 (52.88%), Query Frame = -2
Query:  229 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGSQASQLVLDIRKRKGL 849
            E G D D+A+ +     +    NM +D  KG+QYLNE+ D ++ GF  A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   ++Q+RG +  +M++ G  +  I A  PV E FGF+  +R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  524 ELGMDYDIARGV----VDIYNGNMFLDNTKGIQYLNEVMDLLIDGFHQAMDEGPLAKEPVMKVIVRLVDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGAVSREISQRRGQLI-DMRQEG-EVMTIIAEAPVAEMFGFAGAIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: SN114_YEAST (114 kDa U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae GN=SNU114 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.618e-26
Identity = 72/229 (31.44%), Postives = 120/229 (52.40%), Query Frame = -2
Query:  229 SKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADA-IHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRG-HVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDH--W-----DMMSSDPLEP-------GSQASQLVLDIRKRKGL 867
            SKIL  E+GWD   ++ +W F    +  N  +      + L++ K+ ++ GF WA KEG LAEE + G+ +++  + + +D  I     Q+IP  ++  Y   LTA P LLEP+Y V+I      L  +  ++ ++RG  +++ ++  GTPL  ++  +PV+ES GF + LR +T+G    Q  F H  W     D++  D   P        S +   V+  R+RKG+
Sbjct:  748 SKILRTEYGWDSLASRNVWSFYNGNVLINDTLPDEISPELLSKYKEQIIQGFYWAVKEGPLAEEPIYGVQYKLLSISVPSDVNIDVMKSQIIPLMKKACYVGLLTAIPILLEPIYEVDITVHAPLLPIVEELMKKRRGSRIYKTIKVAGTPLLEVRGQVPVIESAGFETDLRLSTNGLGMCQLYFWHKIWRKVPGDVLDKDAFIPKLKPAPINSLSRDFVMKTRRRKGI 976          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EF2_PYRHO (Elongation factor 2 OS=Pyrococcus horikoshii GN=fusA PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 8.618e-26
Identity = 72/208 (34.62%), Postives = 109/208 (52.40%), Query Frame = -2
Query:  229 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGSQASQLVLDIRKRKGL 849
            E G D ++A+ I     +    NM +D  KGVQYLNE+ D ++ GF  A  EG LA E +  +   + D  +H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   + Q+RG +  +M++ G  +  I A  PV E FGF+ ++R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  524 ELGMDYEIARGI----VDIYNGNMFIDNTKGVQYLNEVMDLLIDGFHQAMDEGPLAREPVMKVIVRLLDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVIINIPYEYMGAVSREITQRRGQLV-DMKQEG-EVMTIIAEAPVAEMFGFAGSIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EF2_NATPD (Elongation factor 2 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=fusA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.618e-26
Identity = 78/218 (35.78%), Postives = 120/218 (55.05%), Query Frame = -2
Query:  199 EFGWDKDLAKKIWCFGPETI-GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEY 849
            E G DKD A+ +     ETI   N+ +D  KG+Q+LNE  + VV G + A  +G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A+ +LLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E  GFSS +R+AT G+A        + +M +D L+P     + + +IR+RKG+K ++    +Y
Sbjct:  524 EQGMDKDTAQNV-----ETIHNTNVFIDDTKGIQHLNETMELVVEGLEEALNDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPAVREAVHNALIDAEIKLLEPIQEVRIDVPNEHMGAASGEIQGRRGRV-DDMYQEG-DLMVVEGVAPVDEMIGFSSDIRSATEGRASWNTENAGFRVM-ADNLQP-----ETIDEIRERKGMKLELPEQIDY 728          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EF2_PYRAB (Elongation factor 2 OS=Pyrococcus abyssi GN=fusA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.126e-25
Identity = 72/208 (34.62%), Postives = 109/208 (52.40%), Query Frame = -2
Query:  229 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGSQASQLVLDIRKRKGL 849
            E G D ++A+ I     +    NM +D  KGVQYLNE+ D ++ GF  A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   + Q+RG +  +M++ G  +  I A  PV E FGF+  +R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  524 ELGMDYEIARGI----VDVYNGNMFLDNTKGVQYLNEVMDLLIDGFHQAMDEGPLAKEPVMKVIVRLIDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVIINIPYEYMGAVSREITQRRGQLV-DMKQEG-EVMTIIAEAPVAEMFGFAGAIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CX046944 vs. ExPASy Swiss-Prot
Match: EF2_METM6 (Elongation factor 2 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=fusA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.470e-25
Identity = 69/210 (32.86%), Postives = 115/210 (54.76%), Query Frame = -2
Query:  220 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQ 849
            E G +K+ AK++          NM+V+M +G+  L+E ++ ++ GF+   + G LA E ++G+   + D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+  +R AT G+      F  ++ + ++ L+P     ++   IR RKGLK +
Sbjct:  530 EAGLEKEQAKRVMSI----YNGNMIVNMTRGIVQLDEARELIIEGFKEGVRNGPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERVPAE-LQP-----KIAKQIRDRKGLKSE 727          
The following BLAST results are available for this feature:
BLAST of CX046944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
EF2_METMP2.268e-2633.81Elongation factor 2 OS=Methanococcus maripaludis G... [more]
RIA1_SCHPO2.962e-2630.56Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]
EF2_PYRKO2.962e-2636.23Elongation factor 2 OS=Pyrococcus kodakaraensis GN... [more]
EF2_PYRWO3.868e-2634.62Elongation factor 2 OS=Pyrococcus woesei GN=fusA P... [more]
EF2_PYRFU3.868e-2634.62Elongation factor 2 OS=Pyrococcus furiosus GN=fusA... [more]
SN114_YEAST8.618e-2631.44114 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_PYRHO8.618e-2634.62Elongation factor 2 OS=Pyrococcus horikoshii GN=fu... [more]
EF2_NATPD8.618e-2635.78Elongation factor 2 OS=Natronomonas pharaonis (str... [more]
EF2_PYRAB1.126e-2534.62Elongation factor 2 OS=Pyrococcus abyssi GN=fusA P... [more]
EF2_METM61.470e-2532.86Elongation factor 2 OS=Methanococcus maripaludis (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11B09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11B09-D18-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046944 ID=CX046944; Name=CX046944; organism=Citrus sinensis; type=EST; length=931bp
TTTTTTTTTTGATCAGAAAGTGAATGGAATAACAGAATTTGAACGTCCAA
ACTTAAATAAACAGAGGCTACAACAACAAACTCAGATAAGTCAACATTGT
TTCCTTCAAAGAAAAAAACAGAACAAAACCAAAGGCAGCAAAAAATGAAT
CTAGTCGCCAGCAATCGATAATGGCAAAAGCGCTTACAGCTTGTCTTCAT
ATTCAGAGAGGGGGGTCATCTGTTCCTTCAAACCCTTCCTCTTCCTAATA
TCCAAAACAAGCTGTGAAGCCTGGGATCCCGGCTCCAATGGATCAGATGA
CATCATGTCCCAGTGATCAAACACACATTGAGGGAATGCCTGTCCAGAGG
TTGCAGCTCTCAAAGTGCTGGAAAATCCAAAAGACTCAACGACCGGGAGG
TATGCCTTGATGTTATAAAGTGGGGTACCAGGTCTCTGCATCTCCTCAAA
AACGTGACCACGTTTCTGGTTAAGAACACTGTAAATACCACCAAGTGCCT
GTTCAGGAGCTTGGATTTCCACCAAGTAGACAGGCTCAAGAAGCCTTGGT
TTGGCTGTAAGCTGGGATGCATAAATGACCCTTCTAGCAGTTGGAATAAC
CTGGCCACCACCTCTGTGGATAGCATCGGCATGAAGAACCACATCACAAA
CTTCAAAGCAAATGCCCCTCATGTTTTCTTCAGCCAATGCACCTTCCTTT
GATGCCCACTGGAACCCAGCAACAACTGAATCCTTAATTTCATTCAAGTA
CTGAACTCCCTTGCACATATCCACAACCATGTTAGGACCAATGGTCTCAG
GACCAAAACACCAGATTTTCTTGGCAAGATCCTTGTCCCAACCAAATTCC
TCAGACAGAATCTTAGAACGAACCTTANGATCATCCCTTGGACCAATACG
ACCATCATCAATTGCCTCAGCAAGACCTTCC
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