CX046924

Overview
NameCX046924
Unique NameCX046924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.096e-44
Identity = 92/152 (60.53%), Postives = 107/152 (70.39%), Query Frame = 1
Query:   64 LFDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            +F   R S++FDPFS+D++DPF        N    + ETSAFANTRIDWKETPEAHVFKADLPGL          + RVLQISGER+ E+E+KNDKW RVERSSGKFMRRFRLPENAKMDQ++ASMENGVL               +I+ISG
Sbjct:    7 IFGDRRSSSMFDPFSIDVFDPFRELGFPGTN----SGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.896e-44
Identity = 89/153 (58.17%), Postives = 109/153 (71.24%), Query Frame = 1
Query:   67 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSS--ARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            F   RRSNV +PFSLDIWDPF+ +    ++  SS   +ET+AFANT IDWKETP+AHVFKADLPGL          +G+VLQISGER++E+EEKN+KWHRVE SSGKF+RRFRLPENA +D+++A MENGVL               +I ISG
Sbjct:    7 FFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.007e-44
Identity = 89/156 (57.05%), Postives = 107/156 (68.59%), Query Frame = 1
Query:   52 MALSLFDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            M  S F++ RRSN+FDPFSLD+WDPF+  +SS     S +RE SA  N R+DW+ETPEAHVFKADLPGL          +  VL+ISGER  E+E+KND WHRVERSSG+F RRFRLPEN KMDQ++A+MENGVL               +I ISG
Sbjct:    3 MIPSFFNNNRRSNIFDPFSLDVWDPFKELTSS-----SLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.536e-43
Identity = 91/154 (59.09%), Postives = 110/154 (71.43%), Query Frame = 1
Query:   64 LFDSGRRSNVFDPFSLDIWDPFE--GFSSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            +F   R S++FDPFS+D++DPF   GF S+      ++ E+SAFANTRIDWKETPE HVFK DLPGL          + RVLQISGER+ E+E+KNDKWHR+ERSSGKFMRRFRLPENAKMDQ++ASMENGVL               +I+ISG
Sbjct:    7 IFGDRRSSSMFDPFSIDVFDPFRELGFPST------NSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.006e-43
Identity = 88/148 (59.46%), Postives = 107/148 (72.30%), Query Frame = 1
Query:   79 RRSNVFDPFSLDIW-DPFEGFSSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            RRSNVFDPF+ D+W DPF+ F S V  I   + ET+AFAN R+DWKETPEAHVFK DLPG+          DG VL +SGERSRE+E+KNDKWHRVERSSGKF+RRFRLPE+AK+++++A +ENGVL               AI+ISG
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGGSSETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.423e-43
Identity = 85/122 (69.67%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   97 DPFSLDIWDPFEGF--SSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            DPFSLD+WDPF+ F  ++S  +  S  +E SAF +TRIDWKETPEAHVFKADLPGL          D RVLQISGER+ E+E+KND+WHRVERSSGKFMRRFRLPENAKMDQ++A+MENGVL
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVL 122          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.838e-43
Identity = 87/148 (58.78%), Postives = 104/148 (70.27%), Query Frame = 1
Query:   76 GRRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            G RSNVFDPFSLD+WDPF+ F    +++ +   E SAF NTR+DWKET EAHV KAD+PGL          D RVLQISGER+ E+E+KND WHRV+RSSGKFMRRFRLPENAK++Q++A MENGVL                I+ISG
Sbjct:   10 GPRSNVFDPFSLDMWDPFKDFHVPTSSVSA---ENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.184e-41
Identity = 85/148 (57.43%), Postives = 105/148 (70.95%), Query Frame = 1
Query:   79 RRSNVFDPFSLDIW-DPFEGFSSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            RR+NVFDPF+ D+W DPF+ F S V  I     ET+AFAN R+DWKETPEAHVFKADLPG+          DG VL +SGER++E+E+KNDKWHRVERSSGKF+RRFRL E+AK+++++A +ENGVL               AI ISG
Sbjct:    5 RRTNVFDPFA-DLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.296e-39
Identity = 83/134 (61.94%), Postives = 97/134 (72.39%), Query Frame = 1
Query:   61 SLFDSGRRSN-VFDPFSLDIWDPFEGFSSSVANIPSS-ARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            S F + RRSN +FDPFSLD+WDPF+         PSS + ETSA  N R+DWKET EAHVFKADLPG+          D  VL+ISGER  E+EEK D WHRVERSSG+F R+F+LPEN KMDQ++ASMENGVL
Sbjct:    6 SFFGNNRRSNSIFDPFSLDVWDPFKELQ-----FPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVL 134          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.943e-38
Identity = 82/134 (61.19%), Postives = 96/134 (71.64%), Query Frame = 1
Query:   61 SLFDSGRR--SNVFDPFSLDIWDPFEGFSSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            S F + RR  +N+FDPFSLD+WDPF+         PSS+  +SA AN R+DWKET EAHVFKADLPG+          D  VL+ISGER  E+EEK D WHRVERSSG F R+FRLPEN KMDQ++ASMENGVL
Sbjct:    6 SFFGNNRRINNNIFDPFSLDVWDPFKELQ-----FPSSS--SSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVL 132          
The following BLAST results are available for this feature:
BLAST of CX046924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HSP11_SOLPE3.096e-4460.5317.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP12_DAUCA6.896e-4458.1718.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS17B_ARATH9.007e-4457.0517.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP11_SOLLC1.536e-4359.0917.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS16A_WHEAT2.006e-4359.4616.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP11_MEDSA3.423e-4369.6718.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP15_SOYBN5.838e-4358.7817.6 kDa class I heat shock protein OS=Glycine max... [more]
HS16B_WHEAT4.184e-4157.4316.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS178_ARATH2.296e-3961.9417.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH1.943e-3861.1917.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11A10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11A10-B20-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046924 ID=CX046924; Name=CX046924; organism=Citrus sinensis; type=EST; length=777bp
CATTAGTACACACACACAGAAACAGAAGCAAACATAGTGAAACACAGCGA
CATGGCTTTGAGTCTTTTTGATAGTGGCCGGAGGAGCAACGTGTTCGATC
CGTTTTCACTGGACATATGGGATCCCTTTGAAGGGTTCTCATCGTCAGTC
GCTAATATTCCGTCCTCAGCAAGGGAAACATCAGCCTTTGCCAACACAAG
AATTGACTGGAAAGAGACCCCAGAAGCTCATGTGTTTAAGGCTGATCTTC
CGGGGCTGAAGAAGGAAGAGGTGAAGGTGGAGGTTGAAGATGGAAGGGTT
CTGCAGATAAGCGGAGAGAGGAGCAGAGAGCAGGAGGAGAAGAACGACAA
GTGGCACCGTGTTGAGAGGAGCAGTGGCAAGTTCATGAGGAGGTTCCGGT
TGCCTGAGAATGCCAAGATGGATCAGATCAGAGCTAGCATGGAGAACGGT
GTGCTTACTGTCACTGTCCCTAAAGAGGATGTTAAGAAGCCTGAGGTTAA
GGCTATTGACATTTCTGGCTGAGGTTGAGCCCGAGGCCGAGAAGCAAGTT
ATTATACAAAATGATATATCATCTACATATACATCCATGCACATGGCTTT
TTGGCCTTTTGATCAGTTTTCTCTTCTGTCTGAATAATAATATTAATAAT
AGTAAATAAGATTGTAGTGTAGTGTTGTCTACTTGTCTTGTCTTGTTTTT
GTGTTTCTGGTTGTACTTTTGTGATGTGATCTCATGTGTATTATACATGA
AGTTATAAAATGTTTGTTGTAAATTAA
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