CX046924

Overview
NameCX046924
Unique NameCX046924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.340e-30
Identity = 73/150 (48.67%), Postives = 87/150 (58.00%), Query Frame = 1
Query:   79 RRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEE--KND-KWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            R  NV DP S+D W   + F +    + S A       N R+DWKETP AHVF ADLPG+          DG VL ISGER+RE++   KND +WH VERSSGKF RRFRLP  A++DQ+ ASM+NGVL               AI ISG
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.558e-24
Identity = 54/120 (45.00%), Postives = 72/120 (60.00%), Query Frame = 1
Query:  112 DIW-----DPFEGFSSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            D+W     DPF         +      + A +  R+DWKETPE HV   D+PGL          + RVL++SGER +E+E+K D WHRVERS GKF R+FRLP+N  +D ++A +ENGVL
Sbjct:   35 DLWSDRFPDPFRVLEHIPFGVDKD-EASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVL 153          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.927e-24
Identity = 53/119 (44.54%), Postives = 74/119 (62.18%), Query Frame = 1
Query:  112 DIW-DPFEGFSSSVANIPSSARE---TSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            D+W D F      +  IP    +   +   ++ R+DWKETPE HV   D+PGL          + RVL++SGER +E+++K D WHRVERS GKF R+F+LP+N  +D ++A MENGVL
Sbjct:   43 DLWSDRFPDPFRVLEQIPYGVEKHEPSITLSHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVL 161          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 1
Query:   91 VFDPFSLDIWDPFEGFSSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLP-GLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            +FD  + D W+PF  F ++VA     A +TSAFANT I+ +ET EA+VF+ADLP G+          +G VL I+GERS  +EEK  + H +ERS   F  RF LP++A +D +RASM+ G+L
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADAWLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGML 128          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.764e-23
Identity = 56/123 (45.53%), Postives = 79/123 (64.23%), Query Frame = 1
Query:   97 DPFSLDIWDPFEGFSS--SVANIPSSARETSAFANTR-IDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            +P S+DI +PF    S  + A  PS+A   +   +T  +DWKET  AHVF AD+PG+          + +VL+ISG+R+R  EEK ++WHRVERSS +F+R  RLP NA  D + A+++NGVL
Sbjct:   34 EPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVL 156          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.145e-22
Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = 1
Query:  112 DIW-DPFEGFSSSVANIPSSA-RETS-AFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            D+W D F      +  IP    R+TS A +  R+DWKET E H    D+PGL          +  VL++SGER RE+E+K D+WHRVERS GKF R+F+LP+N  M+ ++A +ENGVL
Sbjct:   40 DLWLDRFPDPFKILERIPLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVL 157          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.020e-19
Identity = 47/74 (63.51%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  298 VLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISG 519
            +LQISGER+ E+E+KND WHRVERSSGKFMR FRLP+NAK+DQ++ASMENGVL               AI+ISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.977e-18
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  175 ETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQ--EEKN--DKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            + +  +  R+DW+ET +AH    D+PG+          D RVL+ISGER RE+  E+K   D WHR ERS G+F R+ RLP+NA +D I AS++NGVL
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVL 166          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.213e-17
Identity = 56/151 (37.09%), Postives = 82/151 (54.30%), Query Frame = 1
Query:   28 ANIVKHSDMALSLFDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDG-RVLQISGERSR-----EQEEKND--KWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            A +V  +  A +L   G    + DPF +    P        A   ++A E +A A  R DWKETPEAHV   D+PG+          +  RVL++SGER R     E+E + D  +WHR ER++G+F RRFR+P  A + ++ A +++GVL
Sbjct:   18 AMVVMMAPPAAALVPYGYGYMLDDPFRVLEQSPLRPAGGVAA--AAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVL 166          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.091e-16
Identity = 49/111 (44.14%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  130 EGFSSSVANIPSS--ARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            E       N PS    R+  A A T  D KE P ++VF  D+PGL          +  VL ISGER RE+E++  K+ R+ER  GKFMR+F LPENA  D I A  ++GVL
Sbjct:   22 EAAGEDSVNAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVL 132          
The following BLAST results are available for this feature:
BLAST of CX046924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS166_ORYSJ4.340e-3048.6716.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN3.558e-2445.0022.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA7.927e-2444.5422.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HS17B_ORYSJ6.711e-2346.3417.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS189_ORYSJ8.764e-2345.5318.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_ARATH1.145e-2246.6122.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN2.020e-1963.51Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS232_ORYSJ4.977e-1846.9423.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ4.213e-1737.0921.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE2.091e-1644.1417.3 kDa class II heat shock protein OS=Solanum pe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11A10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11A10-B20-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046924 ID=CX046924; Name=CX046924; organism=Citrus sinensis; type=EST; length=777bp
CATTAGTACACACACACAGAAACAGAAGCAAACATAGTGAAACACAGCGA
CATGGCTTTGAGTCTTTTTGATAGTGGCCGGAGGAGCAACGTGTTCGATC
CGTTTTCACTGGACATATGGGATCCCTTTGAAGGGTTCTCATCGTCAGTC
GCTAATATTCCGTCCTCAGCAAGGGAAACATCAGCCTTTGCCAACACAAG
AATTGACTGGAAAGAGACCCCAGAAGCTCATGTGTTTAAGGCTGATCTTC
CGGGGCTGAAGAAGGAAGAGGTGAAGGTGGAGGTTGAAGATGGAAGGGTT
CTGCAGATAAGCGGAGAGAGGAGCAGAGAGCAGGAGGAGAAGAACGACAA
GTGGCACCGTGTTGAGAGGAGCAGTGGCAAGTTCATGAGGAGGTTCCGGT
TGCCTGAGAATGCCAAGATGGATCAGATCAGAGCTAGCATGGAGAACGGT
GTGCTTACTGTCACTGTCCCTAAAGAGGATGTTAAGAAGCCTGAGGTTAA
GGCTATTGACATTTCTGGCTGAGGTTGAGCCCGAGGCCGAGAAGCAAGTT
ATTATACAAAATGATATATCATCTACATATACATCCATGCACATGGCTTT
TTGGCCTTTTGATCAGTTTTCTCTTCTGTCTGAATAATAATATTAATAAT
AGTAAATAAGATTGTAGTGTAGTGTTGTCTACTTGTCTTGTCTTGTTTTT
GTGTTTCTGGTTGTACTTTTGTGATGTGATCTCATGTGTATTATACATGA
AGTTATAAAATGTTTGTTGTAAATTAA
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