CX046924

Overview
NameCX046924
Unique NameCX046924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.268e-13
Identity = 46/114 (40.35%), Postives = 62/114 (54.39%), Query Frame = 1
Query:  124 PFEGFSSSVANIPSSA--RETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKND-KWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            P +  +    N PS    R+  A A T  D  E P A+ F  D+PG+          +  VL +SGER RE +E    K+ R+ER  GKFMR+F+LPENA +D+I A   +GVL
Sbjct:   19 PEDHNNEKTRNNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVL 132          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.657e-13
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  172 RETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSR----EQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            R+  A A T  D K+ P A+ F  D+PGL          + R+L ISGER R    E++E++ K+ R+ER  GKFMR+F LP+NA +D+I A  ++GVL
Sbjct:   45 RDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVL 143          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.164e-13
Identity = 48/108 (44.44%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  142 SSVANIPSSA--RETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKND-KWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            SS ++ PS     +  A A T  D KE P ++VF  D+PGL             VL ISGER RE EEK   K+ R+ER  GK MR+F LPENA  ++I A  ++GVL
Sbjct:   25 SSNSSAPSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVL 132          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 1
Query:  160 PSSARETSAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQI--------------SGERSREQEEKND--KWHRVERSSGK---FMRRFRLPENAKMDQIRASMENGVL 456
            P +    +  A   +DW+ETP AHVF+ DLPGL          DG +L++              +G+ S E+EE+ND  +WH  ER++G+    + +FRLPE+A  D+  A M +GVL
Sbjct:   15 PGAGGVVAGEARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVL 132          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12
Identity = 48/110 (43.64%), Postives = 62/110 (56.36%), Query Frame = 1
Query:  154 NIPSSA--RETSAFANTRIDWKE--TPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKND-----KWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            N P+ A  R+  A ANT +D KE     A V   D+PG+          DG VL ISGER R   + +D     K+ R+ER  GKFMRRF LPE+A +D +RA  ++GVL
Sbjct:   33 NPPTRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVL 142          
BLAST of CX046924 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.392e-12
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 1
Query:  181 SAFANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISG-------ERSREQEEKNDKWHRVERSSGKFMRRFRLPENAKMDQIRASMENGVL 456
            SA A   +DW ETP +HV + ++PGL          DG VL + G       E+ RE+E K+  WH  ER   +F R   LP   +++QIRAS++NGVL
Sbjct:   25 SASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKERERE-KDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVL 122          
The following BLAST results are available for this feature:
BLAST of CX046924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS176_ARATH1.268e-1340.3517.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP18_ORYSJ1.657e-1343.4318.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_IPONI2.164e-1344.4417.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HS178_ORYSJ1.402e-1236.4417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP19_ORYSJ1.832e-1243.6419.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP16_ORYSJ2.392e-1240.4016.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11A10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11A10-B20-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046924 ID=CX046924; Name=CX046924; organism=Citrus sinensis; type=EST; length=777bp
CATTAGTACACACACACAGAAACAGAAGCAAACATAGTGAAACACAGCGA
CATGGCTTTGAGTCTTTTTGATAGTGGCCGGAGGAGCAACGTGTTCGATC
CGTTTTCACTGGACATATGGGATCCCTTTGAAGGGTTCTCATCGTCAGTC
GCTAATATTCCGTCCTCAGCAAGGGAAACATCAGCCTTTGCCAACACAAG
AATTGACTGGAAAGAGACCCCAGAAGCTCATGTGTTTAAGGCTGATCTTC
CGGGGCTGAAGAAGGAAGAGGTGAAGGTGGAGGTTGAAGATGGAAGGGTT
CTGCAGATAAGCGGAGAGAGGAGCAGAGAGCAGGAGGAGAAGAACGACAA
GTGGCACCGTGTTGAGAGGAGCAGTGGCAAGTTCATGAGGAGGTTCCGGT
TGCCTGAGAATGCCAAGATGGATCAGATCAGAGCTAGCATGGAGAACGGT
GTGCTTACTGTCACTGTCCCTAAAGAGGATGTTAAGAAGCCTGAGGTTAA
GGCTATTGACATTTCTGGCTGAGGTTGAGCCCGAGGCCGAGAAGCAAGTT
ATTATACAAAATGATATATCATCTACATATACATCCATGCACATGGCTTT
TTGGCCTTTTGATCAGTTTTCTCTTCTGTCTGAATAATAATATTAATAAT
AGTAAATAAGATTGTAGTGTAGTGTTGTCTACTTGTCTTGTCTTGTTTTT
GTGTTTCTGGTTGTACTTTTGTGATGTGATCTCATGTGTATTATACATGA
AGTTATAAAATGTTTGTTGTAAATTAA
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