CX046862

Overview
NameCX046862
Unique NameCX046862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_PERAE (Ribulose bisphosphate carboxylase large chain OS=Persea americana GN=rbcL PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.262e-66
Identity = 127/156 (81.41%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEAI K+QAETGEIKGHYLN TAGTC+++ K  +  R
Sbjct:  104 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFAR 258
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_NUPVA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Nuphar variegata GN=rbcL PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.262e-66
Identity = 127/156 (81.41%), Postives = 132/156 (84.62%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEA+ KAQAETGEIKGHYLN TAGT +++ K   C R
Sbjct:   95 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALYKAQAETGEIKGHYLNATAGTSEEMLKRAACAR 249
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_MANZA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Manilkara zapota GN=rbcL PE=3 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 4.262e-66
Identity = 127/156 (81.41%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  F+FCAEAI KAQAETGEIKGHYLN TAGTC+++ K  +  R
Sbjct:   94 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVFAR 248
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_ISOTA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Isophysis tasmanica GN=rbcL PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.262e-66
Identity = 127/156 (81.41%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPP+YSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEAI KAQAETGEIKGHYLN TAGTC+++ K  +  R
Sbjct:   95 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPSYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVFAR 249
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_IRIEN (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Iris ensata GN=rbcL PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.262e-66
Identity = 127/156 (81.41%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  F+FCAEAI KAQAETGEIKGHYLN TAGTC+++ K  +  R
Sbjct:  104 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVFAR 258
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_ILLOL (Ribulose bisphosphate carboxylase large chain OS=Illicium oligandrum GN=rbcL PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.262e-66
Identity = 127/156 (81.41%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  F+FCAEAI KAQAETGEIKGHYLN TAGTC+++ K  +  R
Sbjct:  104 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVFAR 258
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_EXAAF (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Exacum affine GN=rbcL PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.262e-66
Identity = 127/156 (81.41%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAY KTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEAI+KAQAETGEIKGHYLN TAGTC+++ K  +  R
Sbjct:   70 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAINKAQAETGEIKGHYLNATAGTCEEMIKRAVFAR 224
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_EURFE (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Euryale ferox GN=rbcL PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.262e-66
Identity = 127/156 (81.41%), Postives = 132/156 (84.62%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFC EAI KAQAETGEIKGHYLN TAGT +++ K  +C R
Sbjct:   95 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCTEAIYKAQAETGEIKGHYLNATAGTSEEMIKRAVCAR 249
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_EUCLU (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Eucryphia lucida GN=rbcL PE=3 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 4.262e-66
Identity = 127/156 (81.41%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEAI KAQAETGEIKGHYLN TAGTC+++ K  +  R
Sbjct:   94 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYAKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVFAR 248
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_DROLU (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Drosophyllum lusitanicum GN=rbcL PE=3 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 4.262e-66
Identity = 127/156 (81.41%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEAI KAQAETGEIKGHYLN TAGTC+++ K  +  R
Sbjct:   95 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVFAR 249
The following BLAST results are available for this feature:
BLAST of CX046862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RBL_PERAE4.262e-6681.41Ribulose bisphosphate carboxylase large chain OS=P... [more]
RBL_NUPVA4.262e-6681.41Ribulose bisphosphate carboxylase large chain (Fra... [more]
RBL_MANZA4.262e-6681.41Ribulose bisphosphate carboxylase large chain (Fra... [more]
RBL_ISOTA4.262e-6681.41Ribulose bisphosphate carboxylase large chain (Fra... [more]
RBL_IRIEN4.262e-6681.41Ribulose bisphosphate carboxylase large chain (Fra... [more]
RBL_ILLOL4.262e-6681.41Ribulose bisphosphate carboxylase large chain OS=I... [more]
RBL_EXAAF4.262e-6681.41Ribulose bisphosphate carboxylase large chain (Fra... [more]
RBL_EURFE4.262e-6681.41Ribulose bisphosphate carboxylase large chain (Fra... [more]
RBL_EUCLU4.262e-6681.41Ribulose bisphosphate carboxylase large chain (Fra... [more]
RBL_DROLU4.262e-6681.41Ribulose bisphosphate carboxylase large chain (Fra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10F11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F11-L21-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046862 ID=CX046862; Name=CX046862; organism=Citrus sinensis; type=EST; length=841bp
GTTTTCTTCTCCTTTTGTGTTCCATAATAAACCTGAACTTGTAGCGCCGT
CAGCCGCACTTGTTGCTCCATCAACTGTGCTGTCAGAAACTGGTTATAGT
TATATCCTCTATCCTCTCTATTTCTAGCCGTTTTGGGTCGGGTTGCCCCT
GAAATTAACAGGGAGGAGAACAACTGCATTACTGGTGGTGGTATCTTCAA
GAAGGATTGGAAAAGCTATTTCTCTAACCAGAACTTTCGGGGTTCCGTAG
AGAGGAGATAGAAATCCATATATGTTATGTAGCTTACCCCTTTAGACCTT
TTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGT
ATTTGGGTTCAAAGCCCTGCGCGCTCTACGTCTAGAGGATCTACGAATCC
CTCCCGCGTATTCTAAAACTTTCCAAGGCCCGCCTCACGGCATCCAAGTT
GAGAGAGATAAATTGAACAAGTATGGCCGTCCCCTGTTGGGATGTACTAT
TAAACGGGTTATCCGCTAAGAATGTCTACGTGGTGGACTTGACTTTACCA
AAGATGATGAGAACGTGAACTCCCAACCATTTATGCGTTGGAGGGGCCCT
TTCTTATTTTGTGCGGAAGCTATTTCTAAAGCGCAAGCTGAAACAGGTGA
AATCAAAGGTCATTACTTGAATACTACTGCAGGAACATGCAAAAAATTAG
AAAAGGGCTGTCTTTGCCAGAGAGTTCCTTTTGGTTTCTCCGCTAANGCA
TGCCTATAGAAGATCCTTGTGGCTACTCACAANGGGAGTTCGGTTCGACC
ATTGGTTCGTTTAGTAGTAAGTCTCGACAGGGAAACTACAA
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