DN618456
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_ENTFA (30S ribosomal protein S13 OS=Enterococcus faecalis GN=rpsM PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 6.005e-27 Identity = 60/120 (50.00%), Postives = 83/120 (69.17%), Query Frame = -2 Query: 133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489 AR+ GV+IP +KR+ SL YI+G+G T A+++L ++ + + +D++ E+ IR E+ K +EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KG +AGKKK Sbjct: 2 ARIAGVDIPRDKRVVVSLTYIYGIGNTTAKKVLANVGVSEDVRVRDLTNEQTDAIRAEIDKLKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPTRGQNTKNNARTRKGPTKTVAGKKK 121
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_CYAP8 (30S ribosomal protein S13 OS=Cyanothece sp. (strain PCC 8801) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 6.005e-27 Identity = 58/123 (47.15%), Postives = 88/123 (71.54%), Query Frame = -2 Query: 127 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAP 489 AR+ GV++P +KR+E L Y+ G+G +R+++IL + + + +D+++EE+ +R + + Y IEGDLRR+ A+ I+RL +I YRG RH QGLP RGQ T+ N RT +G+RV +AGKKKAP Sbjct: 2 ARIAGVDLPRDKRVEIGLTYLFGIGLSRSQEILAETGVNPDTRVRDLTDEEVANLRAYIETNYQIEGDLRRWEAMNIKRLADIGTYRGRRHRQGLPVRGQRTRTNARTRRGRRVTVAGKKKAP 124
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACWK (30S ribosomal protein S13 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 6.005e-27 Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = -2 Query: 133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489 AR+ GV+IP +KR+ SL Y+ G+GRT A +I+ + + ++ +D+SE+EL IRD + + +EGDLRR +L I+RL EI YRG+RH +GLP RGQ++KNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKIITEAGISSETRVRDLSEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACC2 (30S ribosomal protein S13 OS=Bacillus cereus (strain G9842) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 6.005e-27 Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = -2 Query: 133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489 AR+ GV+IP +KR+ SL Y+ G+GRT A +IL + + ++ +D++E+EL IRD + + +EGDLRR +L I+RL EI YRG+RH +GLP RGQ++KNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILTEAGISSETRVRDLTEDELGRIRDVIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STRGC (30S ribosomal protein S13 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27 Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = -2 Query: 133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489 AR+ GV+IPN+KR+ SL Y++G+G +++IL + + KD++ ++ IR EV +EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK Sbjct: 2 ARIAGVDIPNDKRVVVSLTYVYGIGLPTSKKILAAAGVSEDVRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_LARHH (30S ribosomal protein S13 OS=Laribacter hongkongensis (strain HLHK9) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27 Identity = 60/120 (50.00%), Postives = 84/120 (70.00%), Query Frame = -2 Query: 136 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 489 AR+ GV IPN++ I LQ I+G+G TRA+ I +++ K+ KD+++ E+ +RDE++K+ IEGDLRR + I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R IAGKK Sbjct: 2 ARIAGVNIPNHQHIWVGLQAIYGIGATRAKVICSAAGIEISTKV-KDLTDAEMEKLRDEIAKFTIEGDLRREVTMNIKRLMDLGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKPIAGKK 120
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_GLUOX (30S ribosomal protein S13 OS=Gluconobacter oxydans GN=rpsM PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27 Identity = 60/124 (48.39%), Postives = 88/124 (70.97%), Query Frame = -2 Query: 124 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMEN-KITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 489 AR+ GV IP NKR+ +L+Y++G+G + A+ I L++ + K ++S++E++ IR+ + S+ +EGDLRR A+ I+RL ++ CYRG+RH +GLP RGQ T N RT KGK VAIAGKKK R Sbjct: 2 ARIAGVNIPTNKRVVIALRYVYGIGPSTAQSICNKLEIPDAKRVNELSDDEIVKIRELIDSELRVEGDLRRETAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGKAVAIAGKKKVTR 125
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_EXISA (30S ribosomal protein S13 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27 Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = -2 Query: 133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489 AR+ GV+IP KRI SL YI+G+G+T+A++IL + E T+D++E+EL IR+ + +EGDLRR +L I+RL EI YRGIRH + LP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPREKRIVISLTYIYGIGKTKAQEILKAANVSEETRTRDLTEDELNRIREAIDGIKVEGDLRREVSLNIKRLIEIGAYRGIRHRRSLPVRGQNTKNNSRTRKGPRRTVANKKK 121
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_CYAA5 (30S ribosomal protein S13 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27 Identity = 58/123 (47.15%), Postives = 89/123 (72.36%), Query Frame = -2 Query: 127 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAP 489 AR+ GV++P +KR+E L Y++G+G +R+++IL + + + +D+S+E++ +R + + Y IEGDLRR+ A+ I+RL +I YRG RH QGLP RGQ T+ N RT +G+RV +AGKKKAP Sbjct: 2 ARISGVDLPRDKRVEIGLTYLYGIGLSRSQEILAETGVNPDTRVRDLSDEDVAKLRAYIENNYQIEGDLRRWEAMNIKRLADIGTYRGRRHRQGLPVRGQRTRTNGRTRRGRRVTVAGKKKAP 124
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_CAUCR (30S ribosomal protein S13 OS=Caulobacter crescentus GN=rpsM PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27 Identity = 58/121 (47.93%), Postives = 85/121 (70.25%), Query Frame = -2 Query: 133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMEN-KITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489 AR+ GV IP NKR+ +LQYIHG+G+ AR+I+ + +E+ + +++ E++ IR+ + + Y +EGDLRR N++ I+RL ++ CYRG+RH +GLP RGQ T N RT KG IAGKKK Sbjct: 2 ARIAGVNIPTNKRVLIALQYIHGIGQKSAREIITKVGIEDARRVNQLTDAEVLQIRETIDRDYTVEGDLRRENSMNIKRLMDLACYRGLRHRKGLPVRGQRTHTNARTRKGPAKPIAGKKK 122 The following BLAST results are available for this feature:
BLAST of DN618456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DN618456 ID=DN618456; Name=DN618456; organism=Citrus sinensis; type=EST; length=589bpback to top |