DN618456

Overview
NameDN618456
Unique NameDN618456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_ENTFA (30S ribosomal protein S13 OS=Enterococcus faecalis GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.005e-27
Identity = 60/120 (50.00%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL YI+G+G T A+++L ++ +   +  +D++ E+   IR E+ K  +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KG    +AGKKK
Sbjct:    2 ARIAGVDIPRDKRVVVSLTYIYGIGNTTAKKVLANVGVSEDVRVRDLTNEQTDAIRAEIDKLKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPTRGQNTKNNARTRKGPTKTVAGKKK 121          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_CYAP8 (30S ribosomal protein S13 OS=Cyanothece sp. (strain PCC 8801) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.005e-27
Identity = 58/123 (47.15%), Postives = 88/123 (71.54%), Query Frame = -2
Query:  127 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAP 489
            AR+ GV++P +KR+E  L Y+ G+G +R+++IL +  +  +   +D+++EE+  +R  + + Y IEGDLRR+ A+ I+RL +I  YRG RH QGLP RGQ T+ N RT +G+RV +AGKKKAP
Sbjct:    2 ARIAGVDLPRDKRVEIGLTYLFGIGLSRSQEILAETGVNPDTRVRDLTDEEVANLRAYIETNYQIEGDLRRWEAMNIKRLADIGTYRGRRHRQGLPVRGQRTRTNARTRRGRRVTVAGKKKAP 124          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACWK (30S ribosomal protein S13 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.005e-27
Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = -2
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +I+ +  + ++   +D+SE+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKIITEAGISSETRVRDLSEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACC2 (30S ribosomal protein S13 OS=Bacillus cereus (strain G9842) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.005e-27
Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = -2
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + ++   +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILTEAGISSETRVRDLTEDELGRIRDVIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STRGC (30S ribosomal protein S13 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   +  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVVSLTYVYGIGLPTSKKILAAAGVSEDVRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_LARHH (30S ribosomal protein S13 OS=Laribacter hongkongensis (strain HLHK9) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 60/120 (50.00%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  136 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 489
            AR+ GV IPN++ I   LQ I+G+G TRA+ I     +++  K+ KD+++ E+  +RDE++K+ IEGDLRR   + I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R  IAGKK
Sbjct:    2 ARIAGVNIPNHQHIWVGLQAIYGIGATRAKVICSAAGIEISTKV-KDLTDAEMEKLRDEIAKFTIEGDLRREVTMNIKRLMDLGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKPIAGKK 120          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_GLUOX (30S ribosomal protein S13 OS=Gluconobacter oxydans GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 60/124 (48.39%), Postives = 88/124 (70.97%), Query Frame = -2
Query:  124 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMEN-KITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 489
            AR+ GV IP NKR+  +L+Y++G+G + A+ I   L++ + K   ++S++E++ IR+ + S+  +EGDLRR  A+ I+RL ++ CYRG+RH +GLP RGQ T  N RT KGK VAIAGKKK  R
Sbjct:    2 ARIAGVNIPTNKRVVIALRYVYGIGPSTAQSICNKLEIPDAKRVNELSDDEIVKIRELIDSELRVEGDLRRETAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGKAVAIAGKKKVTR 125          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_EXISA (30S ribosomal protein S13 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP  KRI  SL YI+G+G+T+A++IL    + E   T+D++E+EL  IR+ +    +EGDLRR  +L I+RL EI  YRGIRH + LP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPREKRIVISLTYIYGIGKTKAQEILKAANVSEETRTRDLTEDELNRIREAIDGIKVEGDLRREVSLNIKRLIEIGAYRGIRHRRSLPVRGQNTKNNSRTRKGPRRTVANKKK 121          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_CYAA5 (30S ribosomal protein S13 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 58/123 (47.15%), Postives = 89/123 (72.36%), Query Frame = -2
Query:  127 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAP 489
            AR+ GV++P +KR+E  L Y++G+G +R+++IL +  +  +   +D+S+E++  +R  + + Y IEGDLRR+ A+ I+RL +I  YRG RH QGLP RGQ T+ N RT +G+RV +AGKKKAP
Sbjct:    2 ARISGVDLPRDKRVEIGLTYLYGIGLSRSQEILAETGVNPDTRVRDLSDEDVAKLRAYIENNYQIEGDLRRWEAMNIKRLADIGTYRGRRHRQGLPVRGQRTRTNGRTRRGRRVTVAGKKKAP 124          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_CAUCR (30S ribosomal protein S13 OS=Caulobacter crescentus GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 58/121 (47.93%), Postives = 85/121 (70.25%), Query Frame = -2
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMEN-KITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV IP NKR+  +LQYIHG+G+  AR+I+  + +E+ +    +++ E++ IR+ + + Y +EGDLRR N++ I+RL ++ CYRG+RH +GLP RGQ T  N RT KG    IAGKKK
Sbjct:    2 ARIAGVNIPTNKRVLIALQYIHGIGQKSAREIITKVGIEDARRVNQLTDAEVLQIRETIDRDYTVEGDLRRENSMNIKRLMDLACYRGLRHRKGLPVRGQRTHTNARTRKGPAKPIAGKKK 122          
The following BLAST results are available for this feature:
BLAST of DN618456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_ENTFA6.005e-2750.0030S ribosomal protein S13 OS=Enterococcus faecalis... [more]
RS13_CYAP86.005e-2747.1530S ribosomal protein S13 OS=Cyanothece sp. (strai... [more]
RS13_BACWK6.005e-2750.0030S ribosomal protein S13 OS=Bacillus weihenstepha... [more]
RS13_BACC26.005e-2750.0030S ribosomal protein S13 OS=Bacillus cereus (stra... [more]
RS13_STRGC7.843e-2752.5030S ribosomal protein S13 OS=Streptococcus gordoni... [more]
RS13_LARHH7.843e-2750.0030S ribosomal protein S13 OS=Laribacter hongkongen... [more]
RS13_GLUOX7.843e-2748.3930S ribosomal protein S13 OS=Gluconobacter oxydans... [more]
RS13_EXISA7.843e-2752.5030S ribosomal protein S13 OS=Exiguobacterium sp. (... [more]
RS13_CYAA57.843e-2747.1530S ribosomal protein S13 OS=Cyanothece sp. (strai... [more]
RS13_CAUCR7.843e-2747.9330S ribosomal protein S13 OS=Caulobacter crescentu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J13_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618456 ID=DN618456; Name=DN618456; organism=Citrus sinensis; type=EST; length=589bp
CCTTTTTTTTTTTTTGGATCGAAAGCAACCAAGCCTTGTAGTCAAAATGA
TTCACATTCAAATTCAATACAATAGAAAATCAACCCTATCCATTAAATAA
ACAGGAAAAAAGTCATTTAATTAACGAGGGGCTTTCTTTTTCCCAGCAAT
AGCAACCCTCTTACCCTTCAATGTGCGACAATTGTTCTTTGTGTGCTGCC
CTCTACATGGCAAGCCCTGAATATGGCGAATTCCGCGGTAGCATTGAATC
TCCTTCAATCTCCTAATAGCAAGTGCATTGAACCGCCTCAAATCTCCTTC
AATCATGTATTTGGAGACTTCGTCACGAATTGTAATGAGCTCTTCCTCAG
ACATGTCTTTGGTGATTTTGTTCTCCATTTTGAGATCAACGAGGATTTGG
CGAGCTCTTGTGCGCCCAACTCCATGAATATACTGAAGCGAGTACTCAAT
CCGCTTGTTATTTGGAATCTCGACACCTCCAACACGAGCACATTGAATGC
TCAGACCGGGATACTGAGGCTGCTTGGAAACAGGGAAAGACAGGGAAGCG
TTGGTGAGAAGATTATTGTTATGTCCGTTGCAGATAACG
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