DN618456

Overview
NameDN618456
Unique NameDN618456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_CAUCN (30S ribosomal protein S13 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 58/121 (47.93%), Postives = 85/121 (70.25%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMEN-KITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV IP NKR+  +LQYIHG+G+  AR+I+  + +E+ +    +++ E++ IR+ + + Y +EGDLRR N++ I+RL ++ CYRG+RH +GLP RGQ T  N RT KG    IAGKKK
Sbjct:    2 ARIAGVNIPTNKRVLIALQYIHGIGQKSAREIITKVGIEDARRVNQLTDAEVLQIRETIDRDYTVEGDLRRENSMNIKRLMDLACYRGLRHRKGLPVRGQRTHTNARTRKGPAKPIAGKKK 122
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACST (30S ribosomal protein S13 OS=Bacillus stearothermophilus GN=rpsM PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL YI+G+G+  A+ +      E+   +D++EEEL  IR+ V +  +EGDLRR  +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYIYGIGKPTAQILKEAGVSEDTRVRDLTEEELGRIREIVGRLKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 120
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACHK (30S ribosomal protein S13 OS=Bacillus thuringiensis subsp. konkukian GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + E    +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGISEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACCZ (30S ribosomal protein S13 OS=Bacillus cereus (strain ZK / E33L) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + E    +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGISEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACCR (30S ribosomal protein S13 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + E    +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGISEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACCQ (30S ribosomal protein S13 OS=Bacillus cereus (strain Q1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + E    +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGVSEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACCN (30S ribosomal protein S13 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + E    +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGVSEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACC7 (30S ribosomal protein S13 OS=Bacillus cereus (strain AH187) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + E    +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGVSEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACC4 (30S ribosomal protein S13 OS=Bacillus cereus (strain B4264) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + E    +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGISEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACC3 (30S ribosomal protein S13 OS=Bacillus cereus (strain 03BB102) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + E    +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGISEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
The following BLAST results are available for this feature:
BLAST of DN618456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_CAUCN7.843e-2747.9330S ribosomal protein S13 OS=Caulobacter crescentu... [more]
RS13_BACST7.843e-2751.2630S ribosomal protein S13 OS=Bacillus stearothermo... [more]
RS13_BACHK7.843e-2750.8330S ribosomal protein S13 OS=Bacillus thuringiensi... [more]
RS13_BACCZ7.843e-2750.8330S ribosomal protein S13 OS=Bacillus cereus (stra... [more]
RS13_BACCR7.843e-2750.8330S ribosomal protein S13 OS=Bacillus cereus (stra... [more]
RS13_BACCQ7.843e-2750.8330S ribosomal protein S13 OS=Bacillus cereus (stra... [more]
RS13_BACCN7.843e-2750.8330S ribosomal protein S13 OS=Bacillus cereus subsp... [more]
RS13_BACC77.843e-2750.8330S ribosomal protein S13 OS=Bacillus cereus (stra... [more]
RS13_BACC47.843e-2750.8330S ribosomal protein S13 OS=Bacillus cereus (stra... [more]
RS13_BACC37.843e-2750.8330S ribosomal protein S13 OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J13_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618456 ID=DN618456; Name=DN618456; organism=Citrus sinensis; type=EST; length=589bp
CCTTTTTTTTTTTTTGGATCGAAAGCAACCAAGCCTTGTAGTCAAAATGA
TTCACATTCAAATTCAATACAATAGAAAATCAACCCTATCCATTAAATAA
ACAGGAAAAAAGTCATTTAATTAACGAGGGGCTTTCTTTTTCCCAGCAAT
AGCAACCCTCTTACCCTTCAATGTGCGACAATTGTTCTTTGTGTGCTGCC
CTCTACATGGCAAGCCCTGAATATGGCGAATTCCGCGGTAGCATTGAATC
TCCTTCAATCTCCTAATAGCAAGTGCATTGAACCGCCTCAAATCTCCTTC
AATCATGTATTTGGAGACTTCGTCACGAATTGTAATGAGCTCTTCCTCAG
ACATGTCTTTGGTGATTTTGTTCTCCATTTTGAGATCAACGAGGATTTGG
CGAGCTCTTGTGCGCCCAACTCCATGAATATACTGAAGCGAGTACTCAAT
CCGCTTGTTATTTGGAATCTCGACACCTCCAACACGAGCACATTGAATGC
TCAGACCGGGATACTGAGGCTGCTTGGAAACAGGGAAAGACAGGGAAGCG
TTGGTGAGAAGATTATTGTTATGTCCGTTGCAGATAACG
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