DN618456

Overview
NameDN618456
Unique NameDN618456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACC1 (30S ribosomal protein S13 OS=Bacillus cereus (strain ATCC 10987) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + E    +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGVSEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACC0 (30S ribosomal protein S13 OS=Bacillus cereus (strain AH820) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + E    +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGISEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACAN (30S ribosomal protein S13 OS=Bacillus anthracis GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + E    +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGISEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACAH (30S ribosomal protein S13 OS=Bacillus thuringiensis (strain Al Hakam) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + E    +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGISEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACAC (30S ribosomal protein S13 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + E    +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGISEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_BACAA (30S ribosomal protein S13 OS=Bacillus anthracis (strain A0248) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + E    +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGISEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_THET8 (30S ribosomal protein S13 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpsM PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.024e-26
Identity = 60/124 (48.39%), Postives = 85/124 (68.55%), Query Frame = -2 
Query:  124 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 489
            AR+ GVEIP NKR++ +L YI+G+G+ RA++ L    +      KD++E E++ +R+ V   + +EG+LR   A  I+RL +I CYRG+RH +GLP RGQ T+ N RT KG R  +AGKKKAPR
Sbjct:    2 ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKKAPR 125
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_THET2 (30S ribosomal protein S13 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpsM PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.024e-26
Identity = 60/124 (48.39%), Postives = 85/124 (68.55%), Query Frame = -2 
Query:  124 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 489
            AR+ GVEIP NKR++ +L YI+G+G+ RA++ L    +      KD++E E++ +R+ V   + +EG+LR   A  I+RL +I CYRG+RH +GLP RGQ T+ N RT KG R  +AGKKKAPR
Sbjct:    2 ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKKAPR 125
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STRZP (30S ribosomal protein S13 OS=Streptococcus pneumoniae (strain P1031) GN=rpsM PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.024e-26
Identity = 62/120 (51.67%), Postives = 83/120 (69.17%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   +  +D++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STRZJ (30S ribosomal protein S13 OS=Streptococcus pneumoniae (strain JJA) GN=rpsM PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.024e-26
Identity = 62/120 (51.67%), Postives = 83/120 (69.17%), Query Frame = -2 
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   +  +D++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
The following BLAST results are available for this feature:
BLAST of DN618456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_BACC17.843e-2750.8330S ribosomal protein S13 OS=Bacillus cereus (stra... [more]
RS13_BACC07.843e-2750.8330S ribosomal protein S13 OS=Bacillus cereus (stra... [more]
RS13_BACAN7.843e-2750.8330S ribosomal protein S13 OS=Bacillus anthracis GN... [more]
RS13_BACAH7.843e-2750.8330S ribosomal protein S13 OS=Bacillus thuringiensi... [more]
RS13_BACAC7.843e-2750.8330S ribosomal protein S13 OS=Bacillus anthracis (s... [more]
RS13_BACAA7.843e-2750.8330S ribosomal protein S13 OS=Bacillus anthracis (s... [more]
RS13_THET81.024e-2648.3930S ribosomal protein S13 OS=Thermus thermophilus ... [more]
RS13_THET21.024e-2648.3930S ribosomal protein S13 OS=Thermus thermophilus ... [more]
RS13_STRZP1.024e-2651.6730S ribosomal protein S13 OS=Streptococcus pneumon... [more]
RS13_STRZJ1.024e-2651.6730S ribosomal protein S13 OS=Streptococcus pneumon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02J13_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618456 ID=DN618456; Name=DN618456; organism=Citrus sinensis; type=EST; length=589bp
CCTTTTTTTTTTTTTGGATCGAAAGCAACCAAGCCTTGTAGTCAAAATGA
TTCACATTCAAATTCAATACAATAGAAAATCAACCCTATCCATTAAATAA
ACAGGAAAAAAGTCATTTAATTAACGAGGGGCTTTCTTTTTCCCAGCAAT
AGCAACCCTCTTACCCTTCAATGTGCGACAATTGTTCTTTGTGTGCTGCC
CTCTACATGGCAAGCCCTGAATATGGCGAATTCCGCGGTAGCATTGAATC
TCCTTCAATCTCCTAATAGCAAGTGCATTGAACCGCCTCAAATCTCCTTC
AATCATGTATTTGGAGACTTCGTCACGAATTGTAATGAGCTCTTCCTCAG
ACATGTCTTTGGTGATTTTGTTCTCCATTTTGAGATCAACGAGGATTTGG
CGAGCTCTTGTGCGCCCAACTCCATGAATATACTGAAGCGAGTACTCAAT
CCGCTTGTTATTTGGAATCTCGACACCTCCAACACGAGCACATTGAATGC
TCAGACCGGGATACTGAGGCTGCTTGGAAACAGGGAAAGACAGGGAAGCG
TTGGTGAGAAGATTATTGTTATGTCCGTTGCAGATAACG
back to top