DN618456
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_DECAR (30S ribosomal protein S13 OS=Dechloromonas aromatica (strain RCB) GN=rpsM PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.064e-27 Identity = 60/119 (50.42%), Postives = 83/119 (69.75%), Query Frame = -2 Query: 136 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 489 AR+ GV IPN++ E +L I G+GRTRA++I + + KD+S+ ++ +RDEV K+ +EGDLRR + I+RL ++ CYRG+RH +GLPCRGQ T+ N RT KG R AIAGKK Sbjct: 2 ARIAGVNIPNHQHAEIALTAIFGIGRTRAQKICDAAGVGRNVKMKDLSDSDMDRLRDEVGKFTVEGDLRREVTMNIKRLMDLGCYRGLRHRKGLPCRGQRTRTNARTRKGPRKAIAGKK 120
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_CHRVO (30S ribosomal protein S13 OS=Chromobacterium violaceum GN=rpsM PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.064e-27 Identity = 61/119 (51.26%), Postives = 81/119 (68.07%), Query Frame = -2 Query: 136 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 489 AR+ GV IPN+ LQ I GVG+TRA+QI + KD++E E+ +RD+V+K+ +EGDLRR ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK Sbjct: 2 ARIAGVNIPNHAHAVIGLQAIFGVGQTRAQQICAAASVNPSTKVKDLTEAEMEALRDQVAKFTVEGDLRREITMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_OCEIH (30S ribosomal protein S13 OS=Oceanobacillus iheyensis GN=rpsM PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.696e-27 Identity = 65/120 (54.17%), Postives = 85/120 (70.83%), Query Frame = -2 Query: 133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489 AR+ G++IP +KR+ SL YI+GVG+T A+QIL + + E+ +D++E+EL IR V +Y EGDLRR +L I+RL EI YRGIRH +GLP RGQ TKNN RT KG R +A KKK Sbjct: 2 ARIAGIDIPRDKRVVISLTYIYGVGKTTAQQILKEAGVSEDTRVRDLTEDELGRIRQAVDQYNTEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQKTKNNSRTRKGPRKTMANKKK 121
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_MYCMS (30S ribosomal protein S13 OS=Mycoplasma mycoides subsp. mycoides SC GN=rpsM PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.696e-27 Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = -2 Query: 133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489 AR+ GVEIPNNKR+ SL YI+G+G A+ +L L + I KD++EE++ I E+SKY EG LRR +L I+RL EI YRG+RH +GLP RGQ +K N RT+KG R +A KKK Sbjct: 2 ARISGVEIPNNKRVVVSLTYIYGIGLPTAQSVLKTLNISEDIRVKDLTEEQIKNISMEISKYKTEGKLRREVSLNIKRLMEIGSYRGLRHRKGLPVRGQSSKTNARTVKGPRKTVANKKK 121
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_CLOAB (30S ribosomal protein S13 OS=Clostridium acetobutylicum GN=rpsM PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.696e-27 Identity = 63/122 (51.64%), Postives = 87/122 (71.31%), Query Frame = -2 Query: 133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489 AR+ G+++P KR+E L YI+G+G T +R+I+ + E ++ KD++EEE+ +RD ++K + IEGDLRR AL I+RL EI CYRGIRH +GLP RGQ TK N RT KG + A+A KKK Sbjct: 2 ARIAGIDLPKEKRVEIGLTYIYGIGLTSSRKIIKATSVNPETRV-KDLTEEEVNALRDYINKNFKIEGDLRREVALNIKRLVEIGCYRGIRHRRGLPVRGQKTKTNARTRKGPKKAVASKKK 122
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STRTD (30S ribosomal protein S13 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpsM PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.520e-27 Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = -2 Query: 133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489 AR+ GV+IPN+KR+ SL Y++G+G +++IL + I KD++ ++ IR EV +EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK Sbjct: 2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTNDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STRT2 (30S ribosomal protein S13 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpsM PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.520e-27 Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = -2 Query: 133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489 AR+ GV+IPN+KR+ SL Y++G+G +++IL + I KD++ ++ IR EV +EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK Sbjct: 2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTNDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STRT1 (30S ribosomal protein S13 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpsM PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.520e-27 Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = -2 Query: 133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489 AR+ GV+IPN+KR+ SL Y++G+G +++IL + I KD++ ++ IR EV +EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK Sbjct: 2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTNDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STRS7 (30S ribosomal protein S13 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpsM PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.520e-27 Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = -2 Query: 133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489 AR+ GV+IPN+KR+ SL Y++G+G +++IL + I KD++ ++ IR EV +EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK Sbjct: 2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STREM (30S ribosomal protein S13 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpsM PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.520e-27 Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = -2 Query: 133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489 AR+ GV+IPN+KR+ SL Y++G+G +++IL + I KD++ ++ IR EV +EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK Sbjct: 2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121 The following BLAST results are available for this feature:
BLAST of DN618456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN618456 ID=DN618456; Name=DN618456; organism=Citrus sinensis; type=EST; length=589bpback to top |