CX046848

Overview
NameCX046848
Unique NameCX046848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_RHIEC (NADH-quinone oxidoreductase subunit N OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=nuoN PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.368e-46
Identity = 91/203 (44.83%), Postives = 137/203 (67.49%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI--YGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQ---TRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRW 627
            IS +  +MW PD+YEG+PTPVTAF + APK++  A ++R+ I  +    A  QQ+  F SIASM+LG+ AA+ Q  +KRL+A+SSIGH+GY   G + G   G+  +++ + IY +MT+  FAI++++R+   T V+ + DL  L+ TNP  A+  +  MFS AGIPPLAGF +K+++F AA+    Y LA +GV+ SV+G +
Sbjct:  221 ISAVPFHMWTPDVYEGAPTPVTAFFAAAPKVAAMAMLTRIVITAFQPVLADWQQVVVFISIASMLLGSFAAIGQKNIKRLMAYSSIGHMGYALVGLAAGNQTGVSGVMLYMVIYMIMTLGTFAIIMSMRRKDGTVVEDVNDLAGLSATNPFMAVVLTALMFSLAGIPPLAGFFAKYFVFVAAIEAKLYALAIIGVLASVVGAY 423          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON1_RHIME (NADH-quinone oxidoreductase subunit N 1 OS=Rhizobium meliloti GN=nuoN1 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.368e-46
Identity = 95/215 (44.19%), Postives = 143/215 (66.51%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI--YGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQ---TRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRV 651
            L+  IS +  +MW PD+YEG+PTPVTAF +  PK++  + + R+ I  +    A  QQI  F SIASM+LG+ AA+ Q  +KRL+A+SSIGH+GY   G + G++ G++ +++ + IY +MT+  FA +LA+R+     V+ I DL  L++TNP  A   +I MFS AGIPPLAGF +K+++F AA+    Y LA +GV+ SV+G +   R+ +V
Sbjct:  216 LAFKISAVPFHMWTPDVYEGAPTPVTAFFAAGPKVAAISILVRIVINAFEPVVADWQQIIVFISIASMLLGSFAAIGQRNIKRLMAYSSIGHMGYALVGLAAGSMAGVRGVILYMLIYMVMTLGTFACILAMRRREGEHVEGIDDLAGLSQTNPFMATVLTILMFSLAGIPPLAGFFAKYFVFVAAIEAQLYGLAIIGVLASVVGAYYYLRVIKV 430          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_BARBK (NADH-quinone oxidoreductase subunit N OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=nuoN PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.598e-45
Identity = 101/220 (45.91%), Postives = 140/220 (63.64%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYG--------SYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTR--VKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRV 651
            L+  IS +  +MW PD+YEG+PTP+TAF + APKI+  A I RV ++         ++    QQI  F +I+SM LGA AA+ QT +KRL+A+SSIGH+GY   G + G I G++ +LI + IY  MTI +FA +L +R +   V+ I DL  L KTNP  AI  +I +FS A IPP+AGF  K+Y F AA+  G   LA VG+V SVIG +   R+ ++
Sbjct:  217 LAFKISAVPFHMWTPDVYEGAPTPITAFFAGAPKIAAMALIIRVIVFAFIPLESSDNFMPAWQQILIFMAISSMALGAFAAIGQTNIKRLMAYSSIGHMGYALVGLAAGNILGVKGILIYMTIYLGMTIGSFAFILGMRFSNRYVENIYDLAGLVKTNPFMAIVMTIQLFSLASIPPMAGFFGKWYTFSAAVRAGLVPLAIVGMVLSVIGAFYYLRIIKI 436          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_BEII9 (NADH-quinone oxidoreductase subunit N OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=nuoN PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.953e-43
Identity = 97/214 (45.33%), Postives = 136/214 (63.55%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGAT--LQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALR--QTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRV 651
            L+  +S +  +MW PD+YEG+PTPVTAF + APK++  A   R+ I    G     QQI  F SI SM LG+ AA+ QT +KRL+A+SSIGH+G+   G + GT  GIQ +L  + IY +MT+  FA +L++R     V+ I+DL  LA+T    A   +I MFS AGIPPLAGF +K+Y+F AA+    Y LA +GV+ S +G +   R+ +V
Sbjct:  214 LAFKMSTVPFHMWTPDVYEGAPTPVTAFFASAPKLAAIAITMRIMITAFAGIKPQWQQIIVFISILSMALGSFAAIGQTNIKRLMAYSSIGHMGFALVGLAAGTETGIQGVLAYMAIYLVMTLGTFAAILSMRVNGVNVEQISDLAGLARTRGSMAFFLAIMMFSLAGIPPLAGFFAKWYVFNAAIQAHLYPLAVIGVLCSTVGAYYYLRIVKV 427          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_GRABC (NADH-quinone oxidoreductase subunit N OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=nuoN PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.695e-43
Identity = 93/217 (42.86%), Postives = 137/217 (63.13%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQ--QIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQ--TRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCG---AYFLAPVGVVTSVIGRWAAGRLPRV 651
            L+  IS    +MW PD+YEGSPTPVTAF+  APK++  A + R  +   +G  +Q   +    S+ SM+ GALAA+ QT +KRL+A+SSIGH+GY   G + G+  GI+ LLI +  Y  M    FA +LA+R+   +++ ++DL    +T+P  A+  +I MFS AGIPP++GF  K Y+F AA+  G    + LA +GV+TSVIG +   R+ +V
Sbjct:  210 LAFKISAAPFHMWTPDVYEGSPTPVTAFMGTAPKVAAIAMMLRTLVTPFHGVLVQWQHVVALISVVSMVWGALAAIGQTSIKRLMAYSSIGHMGYALVGLAAGSQAGIRGLLIYLVTYVFMNTGTFACILAMRRRGRQLEKVSDLAGAGRTDPALALLLAIFMFSMAGIPPMSGFFGKLYVFLAAVQAGEPLLWGLAVIGVLTSVIGAYYYLRVVKV 426          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_PELUB (NADH-quinone oxidoreductase subunit N OS=Pelagibacter ubique GN=nuoN PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.207e-42
Identity = 94/204 (46.08%), Postives = 133/204 (65.20%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ---IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRVKY--IADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            L+  IS +  +MWAPD+YEGSPT VT F +I PK++      R F+Y  +   + Q   I  F SIASMI GA+AA+ Q  +KRL+A+SSIGH+GY   G S G+ EGIQS ++ + IY +M +  F+ +L L++    Y  I DL  L+K +PI +++    +FS AGIPPLAGF +KFY+F A +    YFLA VG++++VI
Sbjct:  209 LAFKISAVPFHMWAPDVYEGSPTAVTLFFAIVPKVAALTVFIR-FLYIPFVNMIDQWQPILIFLSIASMIFGAIAAIGQNNLKRLIAYSSIGHMGYALAGLSTGSNEGIQSSIVYMSIYLVMNLAFFSCLLMLKRNDAYYETIDDLSGLSKNHPILSLSLLAILFSLAGIPPLAGFFAKFYIFKAVIEQSMYFLAIVGLLSTVI 411          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_JANSC (NADH-quinone oxidoreductase subunit N OS=Jannaschia sp. (strain CCS1) GN=nuoN PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.072e-41
Identity = 87/205 (42.44%), Postives = 128/205 (62.44%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATL---QQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQT--RVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 621
            L+  +S    +MW PD+YEGSPTP+TA  + APK++  A  +RV ++ ++G  +   QQI  F ++ SM LGA+AA+ QT +KRL+A+SSI H+G+   G S GT +G++++LI + IY  M I  FA +L + +    V  I+ L A A   P  A+   + MFS AG+PPL GF  K+ +  AA+  G  +LA  GV+ SVIG
Sbjct:  214 LAFKVSAAPFHMWTPDVYEGSPTPITALFATAPKVAAMALFARV-VHDAFGGVIGDWQQIVAFLAVVSMFLGAIAAIGQTDIKRLMAYSSISHMGFALMGLSAGTAQGVEAMLIYMAIYVAMNIGTFAFILTMERNGRHVTEISSLSAFASKEPTKALAILVMMFSLAGVPPLLGFFGKYAVLVAAVDAGLVWLAIAGVIASVIG 417          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON1_ACICJ (NADH-quinone oxidoreductase subunit N 1 OS=Acidiphilium cryptum (strain JF-5) GN=nuoN1 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.400e-41
Identity = 92/215 (42.79%), Postives = 136/215 (63.26%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ---IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTR--VKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRV 651
            L+  IS    +MW PD+YEG+PT VTAF + APKI++ A + RV + G +G  L Q   +    + ASM++GA+ A+ QT +KRL+ +SSIGH+GY   G + GT  G+   LI + IY +M++  F  ++A+ + R  V+ IADL  +A  +P  A   ++ M+S AGIPPLAGF  KFY+F AA+  G   LA +G++TSVI  +   R+ +V
Sbjct:  210 LAFKISAAPFHMWTPDVYEGAPTSVTAFFATAPKIAVFALLLRVML-GPFGPVLGQWRDLVQIIAAASMVIGAIGAIRQTSIKRLMGYSSIGHMGYALMGLAAGTAAGVSGALIYLAIYLVMSLGTFGCIIAMSRGRQPVERIADLAGMASDDPRFAFVLAVMMWSMAGIPPLAGFFGKFYVFAAAINAGLGPLAVLGIITSVIAAFYYLRVIKV 423          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_GLUDA (NADH-quinone oxidoreductase subunit N OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=nuoN PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.388e-41
Identity = 92/214 (42.99%), Postives = 135/214 (63.08%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI--YGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQ--TRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRV 651
            L+  +S +  +MW PD+Y+G+PT VTA+++ APK +  A + RV    +G      Q +    S+ SM+ G+LAA+ QT +KRL+A+SSIGH+GY   G   GT EG++  L+ +  Y LM + AFA+++A+R+    V  IADL  L KT+P  A   +I MFS AG PPLAGF  K  +F+AA+    + LA +GVV+SVIG +   R+ +V
Sbjct:  211 LTFKLSAVPFHMWTPDVYQGAPTSVTAYMAGAPKFAAFALLLRVMAGPFGHVAPQWQILVEGVSMLSMLFGSLAAIPQTDIKRLMAYSSIGHMGYALMGLCAGTAEGMRGTLVYLTTYLLMNVGAFAVIIAMRRKGREVTGIADLAGLGKTDPGLATAMAIFMFSMAGAPPLAGFFGKMMVFYAAINAHLFGLAAIGVVSSVIGGYYYVRIVKV 424          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_PARDP (NADH-quinone oxidoreductase subunit N OS=Paracoccus denitrificans (strain Pd 1222) GN=nuoN PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.074e-41
Identity = 88/206 (42.72%), Postives = 135/206 (65.53%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATL---QQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRVKYIADLGAL---AKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 621
            LS  +S +  +MW PD+YEGSPTPVTAF + APK++  A I+R+ ++ ++G  +    QI    ++ SM LG++A + QT +KRL+A+SSI H+G+   G + GT  G+Q++L+ + IYA+M I  FA +L++ +  V  + DL AL   A T+P+ A+   + MFS AG+PP  GF +KF +  AA+  G  +LA +GV+ SVIG
Sbjct:  214 LSFKVSAVPFHMWTPDVYEGSPTPVTAFFATAPKVAAMALIARL-VFDAFGHVIGDWSQIVAALAVMSMFLGSIAGIGQTNIKRLMAYSSIAHMGFALVGLAAGTAIGVQNMLLYMTIYAVMNIGTFAFILSMERDGVP-VTDLAALNRFAWTDPVKALAMLVLMFSLAGVPPTLGFFAKFGVLTAAVDAGMGWLAVLGVIASVIG 417          
The following BLAST results are available for this feature:
BLAST of CX046848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUON_RHIEC9.368e-4644.83NADH-quinone oxidoreductase subunit N OS=Rhizobium... [more]
NUON1_RHIME9.368e-4644.19NADH-quinone oxidoreductase subunit N 1 OS=Rhizobi... [more]
NUON_BARBK1.598e-4545.91NADH-quinone oxidoreductase subunit N OS=Bartonell... [more]
NUON_BEII91.953e-4345.33NADH-quinone oxidoreductase subunit N OS=Beijerinc... [more]
NUON_GRABC9.695e-4342.86NADH-quinone oxidoreductase subunit N OS=Granuliba... [more]
NUON_PELUB8.207e-4246.08NADH-quinone oxidoreductase subunit N OS=Pelagibac... [more]
NUON_JANSC1.072e-4142.44NADH-quinone oxidoreductase subunit N OS=Jannaschi... [more]
NUON1_ACICJ1.400e-4142.79NADH-quinone oxidoreductase subunit N 1 OS=Acidiph... [more]
NUON_GLUDA2.388e-4142.99NADH-quinone oxidoreductase subunit N OS=Gluconace... [more]
NUON_PARDP9.074e-4142.72NADH-quinone oxidoreductase subunit N OS=Paracoccu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10F04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F04-L7-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046848 ID=CX046848; Name=CX046848; organism=Citrus sinensis; type=EST; length=656bp
CCCCGAAGAAAACCCCCCTCCCTTTCGGGCTCCATATCTCTTTTGACTCT
ATATATGTGGGCACCTGATATCTATGAGGGTTCACCCACCCCGGTTACAG
CATTCCTTTCTATTGCGCCTAAAATATCTATTTCTGCTAATATTTCACGT
GTTTTTATTTATGGTTCCTATGGAGCTACATTGCAACAAATCTTCTTTTT
CTGCAGCATTGCTTCTATGATCTTAGGAGCACTGGCCGCCATGGCCCAAA
CGAAAGTAAAAAGACTTCTAGCTCATAGTTCAATTGGACATGTAGGTTAT
ATTCGTACTGGTTTCTCATGTGGAACCATAGAAGGAATTCAATCACTACT
AATTGGTATCTTTATTTATGCATTAATGACGATAGATGCATTCGCCATAG
TTTTAGCATTACGGCAAACCCGTGTCAAATATATAGCGGATTTGGGCGCT
CTAGCCAAAACGAATCCTATTTCGGCTATTACCTTCTCCATTACTATGTT
CTCATACGCGGGAATACCCCCGTTAGCCGGCTTTTGTAGCAAATTCTATT
TGTTCTTCGCCGCTTTGGGTTGTGGGGCTTACTTCCTAGCCCCAGTGGGA
GTAGTGACTAGCGTTATAGGTCGTTGGGCGGCCGGAAGGTTGCCACGAGT
AAGCCT
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