CX046848

Overview
NameCX046848
Unique NameCX046848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C_PHYPA (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Physcomitrella patens GN=ndhB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34
Identity = 79/198 (39.90%), Postives = 115/198 (58.08%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVF--IYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            +SL+  + W PD+YEGSPTPV AFLS+A KI+  A + R+F  ++         +    +I SMILG L A+ QT +KR+LA+SSI  +GY+  G   G  +G  S+++ +  Y  M +  FA I+L   +T    I D   L   +P+   + ++ + S  GIPPL+GF  K YLF+ A   G YFL  +G+ TSVI
Sbjct:  227 LSLVPFHQWTPDVYEGSPTPVVAFLSVASKIAGLALLVRLFNIVFPFLPNQWHSLLEISAICSMILGNLVAITQTSMKRMLAYSSISQIGYLMIGLVTGNFDGYTSMIVYLLFYIFMNLGTFACIILFGLRTGTDNIRDYSGLILKDPLLTFSLALCLLSLGGIPPLSGFFGKLYLFWCAWKTGLYFLVFIGLFTSVI 424          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C_PROMM (NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=ndhB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 77/198 (38.89%), Postives = 118/198 (59.60%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI--YGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            I+ +  + W PD+YEGSPTPV AFLS+  K +  A   R+ +  +G++    + +F   ++ SM LG + A+AQT +KR+LA+SSIG  G++  G  CGT +G  ++++ +  Y  M + AFA I+L   +T    I+D   L + +P+  +  S+ + S  GIPP+ GF  K YLFFA      Y L  VG+VTSV+
Sbjct:  238 IAAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALALRLLVGCFGAFDNQWKLLFTVLAVLSMTLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVCGTEDGFAAMVLYMAAYLFMNLGAFACIILFSIRTGSDRISDYAGLYQKDPLITLGLSLCLLSLGGIPPMLGFFGKIYLFFAGWADHQYLLVVVGLVTSVV 435          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C_PROM3 (NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochlorococcus marinus (strain MIT 9303) GN=ndhB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 77/198 (38.89%), Postives = 118/198 (59.60%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI--YGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            I+ +  + W PD+YEGSPTPV AFLS+  K +  A   R+ +  +G++    + +F   ++ SM LG + A+AQT +KR+LA+SSIG  G++  G  CGT +G  ++++ +  Y  M + AFA I+L   +T    I+D   L + +P+  +  S+ + S  GIPP+ GF  K YLFFA      Y L  VG+VTSV+
Sbjct:  238 IAAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALALRLLVGCFGAFDNQWKLLFTVLAVLSMTLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVCGTEDGFAAMVLYMAAYLFMNLGAFACIILFSIRTGSDRISDYAGLYQKDPLITLGLSLCLLSLGGIPPMLGFFGKIYLFFAGWADHQYLLVVVGLVTSVV 435          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C_ACAM1 (NAD(P)H-quinone oxidoreductase subunit 2 OS=Acaryochloris marina (strain MBIC 11017) GN=ndhB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.165e-34
Identity = 81/203 (39.90%), Postives = 116/203 (57.14%), Query Frame = 1
Query:   19 SLSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQIFFFCSIA--SMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAF-AIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            S+S  I+ +  + W PD+YEGSPTPV AFLS+  K +  A   R+          Q  F F ++A  SM+LG + A+AQT +KR+LA+SSIG  G++  G   GT  G  S++  + IY  M + AF  ++L   +T    I D   L   +P+  +  S+ + S  GIPPLAGF  K YLF+A    GAY L  +G++TSV+
Sbjct:  220 SVSFKIAAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLTQAFPNLVEQWQFIFTALAILSMVLGNVVAIAQTSMKRMLAYSSIGQAGFVMIGLVIGTEAGYASMVFYLLIYLFMNLGAFTCVILFSLRTGTDEIGDYAGLYLKDPLLTLALSLCLLSLGGIPPLAGFFGKLYLFWAGWQAGAYGLVLLGLITSVV 422          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C2_NUPAD (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Nuphar advena GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.827e-34
Identity = 81/199 (40.70%), Postives = 119/199 (59.80%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            +S    + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T    I D   L   +P SA++ ++ + S  GIPPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  244 LSPAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFSALSSALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVV 442          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C1_NUPAD (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Nuphar advena GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.827e-34
Identity = 81/199 (40.70%), Postives = 119/199 (59.80%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            +S    + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T    I D   L   +P SA++ ++ + S  GIPPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  244 LSPAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFSALSSALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVV 442          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C_SYNY3 (NAD(P)H-quinone oxidoreductase subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=ndhB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.823e-34
Identity = 80/198 (40.40%), Postives = 117/198 (59.09%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQIFFFCSIA--SMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            IS +  + W PD+YEGSPTPV AFLS+  K +  A   R+ +    G T +    F ++A  SM+LG + A+AQT +KR+LA+SSIG  G++  G   G+ +G  S++  + IY  M + AF+ I+L   +T    I+D   L   +P+  +  SI + S  GIPPLAGF  K Y+F+A    G Y L  +G+VTSV+
Sbjct:  229 ISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFAVAIRLLVTAFGGITDEWHVIFTALAVLSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGSEDGYASMVFYMLIYLFMNLGAFSCIILFTLRTGSDQISDYAGLYHKDPLLTLGLSICLLSLGGIPPLAGFFGKIYIFWAGWQSGLYGLVLLGLVTSVV 426          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C_PAUCH (NAD(P)H-quinone oxidoreductase subunit 2, organellar chromatophore OS=Paulinella chromatophora GN=ndhB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.823e-34
Identity = 74/198 (37.37%), Postives = 117/198 (59.09%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI--YGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            I+ +  + W PD+YEG+PTP+ AFLS+  K +  A   R+ +  + S+    + +F   +I SM+LG + A++QT +KR+LA+SSIG  G++  G  CGT +G  ++++ +  Y  M + AFA ++L   +T    IAD   L + +P+  I  S+ + S  GIPP+ GF  K YLFFA      Y L   G++TSV+
Sbjct:  225 IAAVPFHQWTPDVYEGAPTPIVAFLSVGSKTAGFALALRLLVGCFESFDIQWKFLFSLLAILSMVLGNIVALSQTSMKRMLAYSSIGQAGFVMIGLVCGTEDGFAAMILYLATYLFMNMGAFACVILFSIRTGSDLIADYAGLYQKDPLVTIGLSLCLLSLGGIPPMLGFFGKIYLFFAGWADHQYLLVVTGLITSVV 422          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_CHLAD (NADH-quinone oxidoreductase subunit N OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=nuoN PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.299e-34
Identity = 84/207 (40.58%), Postives = 120/207 (57.97%), Query Frame = 1
Query:   19 SLSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ----IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFS-CGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQT--RVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            + S  ++L   +MW PD+YEGSPTPV AF+S+  K    A + R+   G    TL +    +    +  +M++G L A+AQT VKR+LA+SSIGH GY+  G    G   G ++ L  + +YAL  + AFA+++AL         + D   L +  P+ A+  +I MFS AG+PP+AGF +KFY   AA   G  +LA VGVVTS I
Sbjct:  222 AFSFKVALAPFHMWTPDVYEGSPTPVAAFMSVGTKGGALAALVRLLFEGL--PTLNEYWLPVLAGLTALTMVVGNLGAVAQTNVKRMLAYSSIGHAGYVMLGVMVAGEQRGPEAFLFYMLVYALSNLGAFAVLIALEHQGENAWRLDDFAGLYQRQPLLAVAMAIFMFSLAGVPPMAGFMAKFYALTAAWEGGLPWLALVGVVTSAI 426          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2M_METSE (NADH-ubiquinone oxidoreductase chain 2 OS=Metridium senile GN=ND2 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.226e-34
Identity = 71/195 (36.41%), Postives = 118/195 (60.51%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            +S    +MWAPD+Y+G+PT  TA L+  PK+ + + +  +         +  +    +I SM++GAL A+ QTK+KRLLA+S I H+G++  G   GT E +Q+ LI + +Y +M++ AFA+VLAL   +   I +   L++  P  AIT ++T  S AG+PPL GF SK+++  + +    Y ++ + V+ SV+
Sbjct:  129 LSAAPFHMWAPDVYDGAPTTTTALLATVPKVGVFSILVSI-------GPVANVLLIATIFSMVVGALGALNQTKIKRLLAYSGIAHMGFVLWGIEIGTFESVQASLIYMILYVIMSVCAFAMVLALGGLK-NLIVEFSGLSRKEPALAITLALTFLSIAGVPPLIGFFSKWWILLSGITYQYYLVSILAVICSVV 315          
The following BLAST results are available for this feature:
BLAST of CX046848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU2C_PHYPA1.269e-3439.90NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C_PROMM1.658e-3438.89NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochl... [more]
NU2C_PROM31.658e-3438.89NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochl... [more]
NU2C_ACAM12.165e-3439.90NAD(P)H-quinone oxidoreductase subunit 2 OS=Acaryo... [more]
NU2C2_NUPAD2.827e-3440.70NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_NUPAD2.827e-3440.70NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C_SYNY34.823e-3440.40NAD(P)H-quinone oxidoreductase subunit 2 OS=Synech... [more]
NU2C_PAUCH4.823e-3437.37NAD(P)H-quinone oxidoreductase subunit 2, organell... [more]
NUON_CHLAD6.299e-3440.58NADH-quinone oxidoreductase subunit N OS=Chlorofle... [more]
NU2M_METSE8.226e-3436.41NADH-ubiquinone oxidoreductase chain 2 OS=Metridiu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10F04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F04-L7-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046848 ID=CX046848; Name=CX046848; organism=Citrus sinensis; type=EST; length=656bp
CCCCGAAGAAAACCCCCCTCCCTTTCGGGCTCCATATCTCTTTTGACTCT
ATATATGTGGGCACCTGATATCTATGAGGGTTCACCCACCCCGGTTACAG
CATTCCTTTCTATTGCGCCTAAAATATCTATTTCTGCTAATATTTCACGT
GTTTTTATTTATGGTTCCTATGGAGCTACATTGCAACAAATCTTCTTTTT
CTGCAGCATTGCTTCTATGATCTTAGGAGCACTGGCCGCCATGGCCCAAA
CGAAAGTAAAAAGACTTCTAGCTCATAGTTCAATTGGACATGTAGGTTAT
ATTCGTACTGGTTTCTCATGTGGAACCATAGAAGGAATTCAATCACTACT
AATTGGTATCTTTATTTATGCATTAATGACGATAGATGCATTCGCCATAG
TTTTAGCATTACGGCAAACCCGTGTCAAATATATAGCGGATTTGGGCGCT
CTAGCCAAAACGAATCCTATTTCGGCTATTACCTTCTCCATTACTATGTT
CTCATACGCGGGAATACCCCCGTTAGCCGGCTTTTGTAGCAAATTCTATT
TGTTCTTCGCCGCTTTGGGTTGTGGGGCTTACTTCCTAGCCCCAGTGGGA
GTAGTGACTAGCGTTATAGGTCGTTGGGCGGCCGGAAGGTTGCCACGAGT
AAGCCT
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