CX046848

Overview
NameCX046848
Unique NameCX046848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Homology
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_RHOS5 (NADH-quinone oxidoreductase subunit N OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=nuoN PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.355e-19
Identity = 59/203 (29.06%), Postives = 99/203 (48.77%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLAL-RQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRW 627
            L+  ++L+  +MW PD + G+P    AF   A K+++   + R+   G        +  F  + S++LG LAA+ Q  V R+L +SS+GH GYI    + G      + L  I  YA   + A  +   + R TR   I+DL  +    P++    +  + S AG+P  AGF  K+ +F A +   A+ L  + +  S +G +
Sbjct:  194 LAFKLALVPFHMWTPDAFTGAPGAAAAFAGAASKVAVVTALVRLDAVGLPQVWALGLGTFAGV-SILLGNLAALRQDGVARMLGYSSVGHAGYIAAALATGAASAPAAALFYIVTYAPALLAALCVAALIGRATR---ISDLRGIVWRRPLAGAAMAAALVSLAGLPVSAGFFGKYVIFTALIEGRAWALLALAIAGSALGAY 392          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_FLAPJ (NADH-quinone oxidoreductase subunit N OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=nuoN PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.355e-19
Identity = 63/198 (31.82%), Postives = 103/198 (52.02%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVF--IYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRV-KYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            I+ +  + WAPD+YEGSP   TA +S   KI   A + ++   +      ++Q I    +IASM+LG + A+ Q  VKR+ A S I H G++ +     T     +LL     YA+  I  FA+V+ + + +  + I     L KT+P+ A   +  + S AGIP L+GF +KF+L    +      +  V +++S+I
Sbjct:  206 IATVPFHFWAPDVYEGSPALTTATMSTLAKIVAMATLYKLVTVLLPIQLYSIQIIIVCVAIASMLLGNIMALRQNNVKRMFAFSGISHAGFMVSTLLL-TSNAASTLLYYASAYAIAGIAFFAVVMYVTKDKENETINSFNGLGKTHPLLAGILTAALLSMAGIPVLSGFFAKFFLLNQLVYTDWLIVVFVAIISSII 402          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_TOLAT (NADH-quinone oxidoreductase subunit N OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=nuoN PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 59/207 (28.50%), Postives = 98/207 (47.34%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQIFFF-----CSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFI--YALMTIDAFAIVLALRQTRVKYIAD----LGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 621
            +SL+  ++W PD+Y+G+P PVT +L+   KI++ A + R+F    Y       FF+      +  S+I+G L A+ Q+ +KRLL  SS  H GY+        +  +    + +++  Y L ++ +F +V  +     +  AD       L    PI     +I   S AGIP   GF  KFY+    +    ++L    V  S +G
Sbjct:  222 LSLVPFHLWTPDVYQGAPAPVTTYLATVSKIAVFAVLLRLF----YTIPATDSFFYSLLGGLAFISIIIGNLLALLQSNLKRLLGFSSTAHFGYLLVALIACRLGSLSQEAVALYLVMYLLTSVGSFGVVSLMSSPYQERDADELPAYRGLFWRRPILTSAMTIMFLSLAGIPMTLGFIGKFYILAVGIQFHLWWLTGAVVFGSAVG 424          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_BLOPB (NADH-quinone oxidoreductase subunit N OS=Blochmannia pennsylvanicus (strain BPEN) GN=nuoN PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.275e-18
Identity = 62/207 (29.95%), Postives = 106/207 (51.21%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKIS-ISANISRVFIYGSYGATLQQIFFF-CSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTG----FSCGTIEGIQSLLIGIFIYALMTIDAFAIV------LALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            +SL+  ++W PD+Y+G+P+ ++ +L+ + KI+ IS  I  + ++ +   T+  IF    +  S + G L A+ Q  +KR+LA+SSI H GY+  G            ++++ I +  Y L +I AF I+       A   T V  +     L    P+ ++ F+I + S AGIP   GF  KFYLF   +    ++      ++SVI
Sbjct:  223 LSLVPFHLWTPDVYQGAPSSISLYLTTSSKIAVISVLIRLLMVFPNQYNTVFCIFLLGIACCSALFGNLMAIKQDNIKRVLAYSSIAHTGYVLIGVIAILRVNHPMALETIGIYLISYVLTSIGAFGIINIVSFFYAHEDTDVDSLFVYRGLFWHQPMLSVLFTIIILSLAGIPMTLGFIGKFYLFVLGIDSKLWWFTIFIAMSSVI 429          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_HELAH (NADH-quinone oxidoreductase subunit N OS=Helicobacter acinonychis (strain Sheeba) GN=nuoN PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.665e-18
Identity = 61/204 (29.90%), Postives = 103/204 (50.49%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVF--IYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRVKY-------IADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            +SL+  + W PD+YEG+     +++SI PKI+     +R+F     +  A ++ IF+   + ++ +  L A+ Q  VKR+LA+SSI H G+        T E  +++ +  F++A   I AF ++  L+     +        +    L KT+P+ AI  +I +F  AGIPP + F  KF    +AL      LA V +  S +
Sbjct:  226 VSLVPFHTWMPDVYEGNNPVFASYISIVPKIAGFVVATRLFGAFIDTRIAWVEDIFYALILITITIPNLIALWQEDVKRMLAYSSISHSGFALACVFIHTEESQKAMFVYWFMFAFTYIGAFGLLWLLKSREKTWDERYDHPYSKFDGLIKTHPLVAILGAIFVFGLAGIPPFSVFWGKFLAVESALESNHILLAAVMLANSAV 429          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_AERHH (NADH-quinone oxidoreductase subunit N OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=nuoN PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 54/204 (26.47%), Postives = 97/204 (47.55%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGA--TLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFI--YALMTIDAFAIVLAL----RQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 621
            +SL   ++W PD+YEG+P PV  FL+   KI++   + R ++     A   +  +    ++ S+++G L A+ QT +KR++ +SSI H GY+        +  +     G+++  Y   ++ AF ++  +    R      +     L    P      ++ M S AGIP   GF  KFYL    +    ++L+   V+ S +G
Sbjct:  218 LSLAPFHLWTPDVYEGAPAPVATFLATVSKIAVFCVLLRFYLAVPAAADPMIHWLLAAMAVISIVIGNLLALLQTNIKRMMGYSSISHFGYLLAVIVASRLGQMPVEAAGVYLLMYLFTSLGAFGVISMMSSPYRGKDADSLHSYRGLFWRRPYLTAVLTVMMLSLAGIPMTLGFIGKFYLIGVTVDAKLWWLSGAIVLGSALG 421          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_BLOFL (NADH-quinone oxidoreductase subunit N OS=Blochmannia floridanus GN=nuoN PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.710e-18
Identity = 60/210 (28.57%), Postives = 104/210 (49.52%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIY--GSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGF------SCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRV---KYIADL----GALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            +S +  ++W  DIY+G+PT V+ +L+   KI+++A + R  +     Y   L       +  SM+ G+L A+ Q  +KR+LA+SSI + GY+          +C  I+  +S+ + +  Y    +  + IV  +    +   K  AD       L    P+ ++ F I + S AGIP   GF  KFYL F  +    +FL  + +++S+I
Sbjct:  231 LSCVPFHLWISDIYQGTPTAVSMYLATGSKIAVTAVLMRFLLILPDQYNELLHIFLSVSACCSMLFGSLMAIPQISIKRMLAYSSITNAGYLLIALIALRMNNCAIIQ--ESISVYLVSYLFANVGVWGIVNIVSTAYIQKEKNDADTIYLYHGLFWREPMLSVIFVIAILSLAGIPMTFGFIGKFYLLFIGISNQLWFLTVMMIISSII 438          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_NEORI (NADH-quinone oxidoreductase subunit N OS=Neorickettsia risticii (strain Illinois) GN=nuoN PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.845e-18
Identity = 58/189 (30.69%), Postives = 92/189 (48.68%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPK-------ISISANISRVFIYGSYGAT--------LQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGI-FIYALMTIDAFAIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYL 552
            ++    + W  DIYEG+PT  T F ++ PK       +S+ +N+  +   GS  +T        L+ I F   I S+  G  +A  Q  +KR +  +SI HVGY+  G S        +  I    +Y+   +   ++VL L+    K+I  L  L  +N + A+ F + +FS AG+PP  GF SK Y+
Sbjct:  199 VAAAPFHAWIGDIYEGAPTVSTTFFAVLPKLSLIVVLVSLISNLEPIAYTGSTYSTELMENSQYLRNILFTSGILSIAFGTFSAFGQKNIKRFIGFASIAHVGYMLLGVSNSASLSFGNPGIAYALVYSFTNLGILSVVLMLKD---KHITSLKKLRCSNNLVALAFVLLLFSSAGVPPFIGFWSKAYV 384          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_FRATF (NADH-quinone oxidoreductase subunit N OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=nuoN PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.328e-18
Identity = 52/194 (26.80%), Postives = 94/194 (48.45%), Query Frame = 1
Query:   52 YMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQIFFF--CSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSC---GTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            +MW PD+Y+G+P  V   ++  PK++  A +  +   G        I+ F    I S+  G+L A++QT VKRLL +S++  +G++    +    G      S  + ++++  + +      +++    V+ + DL      +   A    I +FS AGIPP  GF +K ++    +  G YFLA   +  +VI
Sbjct:  231 HMWLPDVYQGAPNAVANIVATIPKVAAFAMLVNILFVGFPSLKDSWIYLFRIIGILSIFFGSLVALSQTNVKRLLGYSTVSQIGFVLLATTLNPQGYALTAASFYVIVYLFTTLAVFGVLTTISVGGYEVQDLNDLKGFNTKDSWLAFILLIVLFSMAGIPPFGGFIAKLFVVMGLINDGNYFLACFVLFMAVI 424          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_BUCBP (NADH-quinone oxidoreductase subunit N OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nuoN PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.079e-17
Identity = 60/209 (28.71%), Postives = 105/209 (50.24%), Query Frame = 1
Query:   25 SGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQIFFF----CSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFI--YALMTIDAFAIVLAL----RQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 621
            S  +SL   ++W PD+Y+G  +      S + KI+I + + ++FI  SY   ++++F++     S  SMI G + A+ QT +KRL+ +SSI  +GY+               + GI++  YAL  I  F I+  L    +   V  I    +L  ++PI +   ++ M S +GIP   GF  KFYL    +    +    + +++++IG
Sbjct:  219 SFKLSLFPFHIWTPDVYQGMSSEALMIFSTSVKIAIFSVLFKIFIVLSY-FHIEEVFYYLVSIISCLSMIFGNIMAINQTSIKRLMGYSSISQLGYLFIVLVISRNMQFSLEVTGIYLINYALSNIGMFGIMSVLSSLYKNFNVDSIFSYRSLFWSSPILSGVMTVVMLSLSGIPMTVGFLGKFYLMSLVVKEHMWLFICLFIISTIIG 426          
The following BLAST results are available for this feature:
BLAST of CX046848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUON_RHOS53.355e-1929.06NADH-quinone oxidoreductase subunit N OS=Rhodobact... [more]
NUON_FLAPJ3.355e-1931.82NADH-quinone oxidoreductase subunit N OS=Flavobact... [more]
NUON_TOLAT9.762e-1928.50NADH-quinone oxidoreductase subunit N OS=Tolumonas... [more]
NUON_BLOPB1.275e-1829.95NADH-quinone oxidoreductase subunit N OS=Blochmann... [more]
NUON_HELAH1.665e-1829.90NADH-quinone oxidoreductase subunit N OS=Helicobac... [more]
NUON_AERHH2.840e-1826.47NADH-quinone oxidoreductase subunit N OS=Aeromonas... [more]
NUON_BLOFL3.710e-1828.57NADH-quinone oxidoreductase subunit N OS=Blochmann... [more]
NUON_NEORI4.845e-1830.69NADH-quinone oxidoreductase subunit N OS=Neoricket... [more]
NUON_FRATF6.328e-1826.80NADH-quinone oxidoreductase subunit N OS=Francisel... [more]
NUON_BUCBP1.079e-1728.71NADH-quinone oxidoreductase subunit N OS=Buchnera ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10F04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F04-L7-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046848 ID=CX046848; Name=CX046848; organism=Citrus sinensis; type=EST; length=656bp
CCCCGAAGAAAACCCCCCTCCCTTTCGGGCTCCATATCTCTTTTGACTCT
ATATATGTGGGCACCTGATATCTATGAGGGTTCACCCACCCCGGTTACAG
CATTCCTTTCTATTGCGCCTAAAATATCTATTTCTGCTAATATTTCACGT
GTTTTTATTTATGGTTCCTATGGAGCTACATTGCAACAAATCTTCTTTTT
CTGCAGCATTGCTTCTATGATCTTAGGAGCACTGGCCGCCATGGCCCAAA
CGAAAGTAAAAAGACTTCTAGCTCATAGTTCAATTGGACATGTAGGTTAT
ATTCGTACTGGTTTCTCATGTGGAACCATAGAAGGAATTCAATCACTACT
AATTGGTATCTTTATTTATGCATTAATGACGATAGATGCATTCGCCATAG
TTTTAGCATTACGGCAAACCCGTGTCAAATATATAGCGGATTTGGGCGCT
CTAGCCAAAACGAATCCTATTTCGGCTATTACCTTCTCCATTACTATGTT
CTCATACGCGGGAATACCCCCGTTAGCCGGCTTTTGTAGCAAATTCTATT
TGTTCTTCGCCGCTTTGGGTTGTGGGGCTTACTTCCTAGCCCCAGTGGGA
GTAGTGACTAGCGTTATAGGTCGTTGGGCGGCCGGAAGGTTGCCACGAGT
AAGCCT
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