CX046848

Overview
NameCX046848
Unique NameCX046848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: MNHD2_STAA1 (Putative antiporter subunit mnhD2 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=mnhD2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.244e-14
Identity = 54/204 (26.47%), Postives = 97/204 (47.55%), Query Frame = 1
Query:   43 LTLYMWAPDIYEGSPTPVTA-FLSIAPKISISANISRVF--IYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQ-TRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRL 642
            L L+MW P  Y    T + A F ++  K+   A I R F  ++  +   +  +    +  +M++GA+  +A   +K++ A+  I  +G+I  G    T  GI   +  +    ++    F I+ +L   T  +    L  LAK  P+  + F I +F+  G+PP +GF  K  +F  AL  G Y    + ++TS+I  ++  R+
Sbjct:  223 LVLFMWLPKAYAVLNTELAALFAALMTKVGAYALI-RFFTLLFDQHNDLIHPLLATMAAITMVIGAIGVIAYKDIKKIAAYQVIISIGFIILGLGTNTFAGINGAIFYLVNDIVVKTLLFFIIGSLVYITGYRQYQYLNGLAKKEPLFGVAFIIMIFAIGGVPPFSGFPGKVLIFQGALQNGNYIGLALMIITSLIAMYSLFRI 425          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUOM_RICFE (NADH-quinone oxidoreductase subunit M OS=Rickettsia felis GN=nuoM PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.543e-14
Identity = 61/226 (26.99%), Postives = 103/226 (45.58%), Query Frame = 1
Query:   16 PSLSGSISLLT--LYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI-------YGSYG---------ATLQQIF----FFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLAL-RQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKF--YLFFAALGCGAYFLAPVGVVTSVI 618
            P L+G+I L T  +  WA  I      P+  F +  P   + A  S   I       +G YG         +++ Q F     + S+ ++I  +L A+AQ  +K+++A+SSI H+GY+  G    T  G+   +  +  + +++   F IV  L  +   K IA  G +A   P+ A  F I M    G+P  +GF  +F   L    +   A F+A +G++   +
Sbjct:  203 PELTGNIPLFTQQILWWAIFIAFAVKIPIIPFHTWLPDAHVQAPTSGSVILAGILLKFGGYGFLRVLLPLFSSVSQEFAIYVIYLSVIAIIYASLVALAQKDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGVISSCLFLIVGTLYERLHTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVIATFIAALGIILGAV 428          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON_SALTO (NADH-quinone oxidoreductase subunit N OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=nuoN PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 59/215 (27.44%), Postives = 100/215 (46.51%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYI------------RTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRVK--YIADLGALAKTNPISAITFSITMFSYAGIPP-LAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 621
            L+  ++ +  + WAP  Y+G+P PV A+LS   K+     +  V  +         +    ++ +M +G L A+ Q +  RLLA SS+   GYI            RTG +        + +     + ++ + AFA V+ALR        + +L   A+  P +A+  ++ +   AG+PP LAG  +K  +  + L  GA  LA V  V +V+G
Sbjct:  222 LTVKVAAVPFHAWAPTTYDGAPLPVAAYLSTVSKLGGVVALLAVVQHALPAQITGLVLALLAVLTMTVGNLVALRQRRTVRLLAWSSVAQAGYILAPLGALALAAGRTGDA--RAAAYAAAVAYTVFFVVLELAAFAAVVALRPAGADGGTLDELRGAARRRPWAAVGLALALVGLAGLPPGLAGLFAKVTVVRSLLDGGAAGLALVVAVNAVLG 434          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON2_STRGG (NADH-quinone oxidoreductase subunit N 2 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=nuoN2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 58/201 (28.86%), Postives = 93/201 (46.27%), Query Frame = 1
Query:   52 YMWAPDIYEGSPTPVTAFLSIAPK-ISISANI-SRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVK-----RLLAHSSIGHVGYIRTGFSCGTI---EGIQSLLIGIFIYALMTIDAFAIVLALRQTRV-KYIADLGALAKTNPISAITFSITMFSYAGIPP-LAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            + W PD Y G+P P+ A+LS+  K +  S  I   V  + SY           +  +M  G +AA+ Q   +     RLLA SS+   GY+    +       + I S +    +YA++ + AFA+   + +T     + D   L  T P++A+     +   AG+PP + G  +K  +F AA+  G  +LA V  V  VI
Sbjct:  258 HFWVPDTYVGAPLPIAAYLSVVGKAVGFSGLILVTVVAFPSYADVWGPALAVLAALTMTAGNVAALRQNAARARSAVRLLAWSSVAQAGYLLVPIAAAAYSSDDQIGSTVAYALMYAVVNLGAFAVAAVVARTHPGNRLTDYRGLYATRPLAALALGFFLLCLAGLPPGIIGLFAKVTVFSAAVDAGLGWLAVVMAVNVVI 458          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU5C_LIGVU (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Ligustrum vulgare GN=ndhF PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 57/177 (32.20%), Postives = 93/177 (52.54%), Query Frame = 1
Query:   49 LYMWAPDIYEGSPTPVTAFLS----IAPKISISANISRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTI-EGIQSLLIGIFIYALMTIDAFAIVLALRQTRVKYIAD-------LGALAKTNPISAITFSITMFSYAGIPPLAGFCSK 543
            L++W PD  EG PTP++A +     +A  I + A +  +FI   Y   +     F  I +++LGA  A+AQ  +KR LA+S++  +GY+      G+    +  L+   +  AL+ + + +I+ ++ +T V Y  D       +G L K  PI+ I+F +   S  GIPPLA F SK
Sbjct:  246 LHVWLPDAMEG-PTPISALIHAATMVAAGIFLVARLLPLFIVIPY---IMNFISFIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSIIHSM-ETIVGYSPDKSQNMVLMGGLRKHVPITQISFLLGTLSLCGIPPLACFWSK 417          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUOM_RICTY (NADH-quinone oxidoreductase subunit M OS=Rickettsia typhi GN=nuoM PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.456e-14
Identity = 56/210 (26.67%), Postives = 98/210 (46.67%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLS-----------IAPKISISANISRVF-IYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLAL-RQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKF--YLFFAALGCGAYFLAPVGVVTSVI 618
            I ++  + W PD +  +PT  +  L+           +   + +  N+S+ F IY  Y           S+ ++I  +L A+AQ  +K+++A+SSI H+GY+  G    T  GI   +  +  + +++   F IV  L  +   K IA  G +A   P+ A  F ITM S  G+P  +GF  +F   L    +   A  +A +G++   +
Sbjct:  230 IPMIPFHTWLPDAHVQAPTSGSVILAGILLKLGSYGFLRVLLPLLPNVSQEFAIYVIY----------LSVIAIIYSSLVALAQKDIKQMIAYSSIAHMGYVTIGIFSFTETGISGAIFQMLSHGVVSSSLFLIVGTLYERLHTKEIAKYGGVASKMPVLATFFMITMLSSIGLPSTSGFIGEFLSLLGIYKVNVVAACIAALGIILGAV 429          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU5C_DIOEL (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Dioscorea elephantipes GN=ndhF PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 60/199 (30.15%), Postives = 97/199 (48.74%), Query Frame = 1
Query:   49 LYMWAPDIYEGSPTPVTAFLS----IAPKISISANISRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIE-GIQSLLIGIFIYALMTIDAFAIVLALRQTRVKYIAD-------LGALAKTNPISAITFSITMFSYAGIPPLAGFCSK------FYLFFAALGCGAYFLA 591
            L++W PD  EG PTP++A +     +A  I + A +  +FI   Y   +  +     I +++LGA  A+AQ  +KR LA+S++  +GYI      G+    +  L+   +  AL+ + + +I+ ++    V Y  D       +G L K  P++  TF +   S  GIPPLA F SK       +L+       AYF A
Sbjct:  246 LHVWLPDAMEG-PTPISALIHAATMVAAGIFLVARLRPLFIVIPY---IMNLISLIGIITLLLGATLALAQGDIKRSLAYSTVSQLGYIMLALGIGSYRAALFHLITHAYSKALLFLGSGSIIHSMEPV-VGYSPDKSQNMVLMGGLKKYVPVTRTTFLLGTLSLCGIPPLACFWSKDEILTDSWLYSPIFAIIAYFTA 439          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2M_PICCA (NADH-ubiquinone oxidoreductase chain 2 OS=Pichia canadensis GN=ND2 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 57/222 (25.68%), Postives = 103/222 (46.40%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIY------------GSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGY----IRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLA-----------LRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            I    +Y W+  +Y  S T +T+++S+ PKISI + I  + +              +    L  I     I S+I+G++  + Q K+K +LA+S + ++GY    I +  +   I  I + +I I  Y    I  F +++            +    + YI +L  + K N        I + S+ GIPPL GF  K+YL  +++     FL+ + +++S+I
Sbjct:  251 IGAAPMYNWSILLYSNSNTIITSYISLIPKISILSYILLIILNLYNLNNLNNLFNNNNNNNLIYILSIIIILSLIIGSIGGLTQIKIKNILAYSGLLNIGYFLLIILSLINNNNINSILAYIIYITQYCFNHISIFILLIIAIIYNNNYNNFITNKNLIYIYELNYI-KNNRYLIFCLIIIIGSFIGIPPLFGFYGKYYLLISSINSNYLFLSLLLIISSII 471          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: MNHD1_STAAW (Na(+)/H(+) antiporter subunit D1 OS=Staphylococcus aureus (strain MW2) GN=mnhD1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 52/205 (25.37%), Postives = 99/205 (48.29%), Query Frame = 1
Query:   49 LYMWAPDIYEGSPTPVTAFL-SIAPKISISANISRVFIYGSYGATLQQ-IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYAL--MTIDAFAIVLALRQTRVKYIADL---GALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRL 642
            +++W P  Y   P P+ AF  ++  K+ + A    + ++ S   +    +  F ++ ++I G + A+A   +K+++ ++ +  VG I  G +  T  G    +IG   Y L  M +     +L     ++   ADL   G L K  P+   +F I   S AGIPPL+GF  KF++  +    G Y    + +++S++  ++  R+
Sbjct:  229 MFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESG----MIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRI 429          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: MNHD1_STAAU (Na(+)/H(+) antiporter subunit D1 OS=Staphylococcus aureus GN=mnhD1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 52/205 (25.37%), Postives = 99/205 (48.29%), Query Frame = 1
Query:   49 LYMWAPDIYEGSPTPVTAFL-SIAPKISISANISRVFIYGSYGATLQQ-IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYAL--MTIDAFAIVLALRQTRVKYIADL---GALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRL 642
            +++W P  Y   P P+ AF  ++  K+ + A    + ++ S   +    +  F ++ ++I G + A+A   +K+++ ++ +  VG I  G +  T  G    +IG   Y L  M +     +L     ++   ADL   G L K  P+   +F I   S AGIPPL+GF  KF++  +    G Y    + +++S++  ++  R+
Sbjct:  229 MFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESG----MIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRI 429          
The following BLAST results are available for this feature:
BLAST of CX046848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MNHD2_STAA14.244e-1426.47Putative antiporter subunit mnhD2 OS=Staphylococcu... [more]
NUOM_RICFE5.543e-1426.99NADH-quinone oxidoreductase subunit M OS=Rickettsi... [more]
NUON_SALTO7.240e-1427.44NADH-quinone oxidoreductase subunit N OS=Salinispo... [more]
NUON2_STRGG7.240e-1428.86NADH-quinone oxidoreductase subunit N 2 OS=Strepto... [more]
NU5C_LIGVU7.240e-1432.20NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NUOM_RICTY9.456e-1426.67NADH-quinone oxidoreductase subunit M OS=Rickettsi... [more]
NU5C_DIOEL1.235e-1330.15NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU2M_PICCA1.235e-1325.68NADH-ubiquinone oxidoreductase chain 2 OS=Pichia c... [more]
MNHD1_STAAW1.235e-1325.37Na(+)/H(+) antiporter subunit D1 OS=Staphylococcus... [more]
MNHD1_STAAU1.235e-1325.37Na(+)/H(+) antiporter subunit D1 OS=Staphylococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10F04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F04-L7-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046848 ID=CX046848; Name=CX046848; organism=Citrus sinensis; type=EST; length=656bp
CCCCGAAGAAAACCCCCCTCCCTTTCGGGCTCCATATCTCTTTTGACTCT
ATATATGTGGGCACCTGATATCTATGAGGGTTCACCCACCCCGGTTACAG
CATTCCTTTCTATTGCGCCTAAAATATCTATTTCTGCTAATATTTCACGT
GTTTTTATTTATGGTTCCTATGGAGCTACATTGCAACAAATCTTCTTTTT
CTGCAGCATTGCTTCTATGATCTTAGGAGCACTGGCCGCCATGGCCCAAA
CGAAAGTAAAAAGACTTCTAGCTCATAGTTCAATTGGACATGTAGGTTAT
ATTCGTACTGGTTTCTCATGTGGAACCATAGAAGGAATTCAATCACTACT
AATTGGTATCTTTATTTATGCATTAATGACGATAGATGCATTCGCCATAG
TTTTAGCATTACGGCAAACCCGTGTCAAATATATAGCGGATTTGGGCGCT
CTAGCCAAAACGAATCCTATTTCGGCTATTACCTTCTCCATTACTATGTT
CTCATACGCGGGAATACCCCCGTTAGCCGGCTTTTGTAGCAAATTCTATT
TGTTCTTCGCCGCTTTGGGTTGTGGGGCTTACTTCCTAGCCCCAGTGGGA
GTAGTGACTAGCGTTATAGGTCGTTGGGCGGCCGGAAGGTTGCCACGAGT
AAGCCT
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