CX046848

Overview
NameCX046848
Unique NameCX046848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C1_IPOPU (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Ipomoea purpurea GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 79/193 (40.93%), Postives = 117/193 (60.62%), Query Frame = 1
Query:   52 YMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M + AFA IVL   +T    I D   L   +P  A++ ++ + S  G+PPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  250 HQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGAFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCGWQAGLYFLVFIGLLTSVV 442          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON1_ACIBL (NADH-quinone oxidoreductase subunit N 1 OS=Acidobacteria bacterium (strain Ellin345) GN=nuoN1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 80/206 (38.83%), Postives = 122/206 (59.22%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG----TIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRV--KYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRW 627
            I+ +  + WAPD YEG+PT VT F+S+A K +  A + R+F++  +    Q   I  F ++A+MI G  AA+ QT VKRLLA+SSI HVGY+  G        +  GI+ +L+ + +Y  M + AFA++ +LR+  +    + DL  L    P  A+   + + S AGIPPLAGF  K+Y+F + +  G Y LA V V+ +V+G +
Sbjct:  238 IAAVPFHQWAPDAYEGAPTAVTGFMSVAVKAAGWAMLLRIFLFMLWPMREQYTPILIFVAVATMIGGNFAALTQTNVKRLLAYSSISHVGYMLLGLVASDGKNSSTGIKGILVYLAVYTFMNLGAFAVITSLRRRDIIGDELDDLAGLFFKAPSEAVLLLVFLLSLAGIPPLAGFWGKYYIFLSLMETGHYTLAVVAVLFAVLGMY 443          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C_SYNP2 (NAD(P)H-quinone oxidoreductase subunit 2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 78/198 (39.39%), Postives = 113/198 (57.07%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISR--VFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAF-AIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            IS +  + W PD+YEGSPTPV AFLS+  K +  A   R  V ++         IF   +I SM+LG + A+AQT +KR+LA+SSI   G++  G   GT  G  S++  + +Y  M + AF  ++L   +T    IA+   L + +P+  +  S+ + S  GIPPLAGF  K YLF+A    G Y L  +G++TSVI
Sbjct:  228 ISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTVFNPVSEEWHFIFTALAILSMVLGNVVALAQTSMKRMLAYSSIAQAGFVMIGLVAGTDAGYSSVIFYLLVYLFMNLGAFTCVILFSLRTGTDQIAEYAGLYQKDPLLTLGLSVCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYGLVLLGLITSVI 425          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C_COECR (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Coelogyne cristata GN=ndhB PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 76/199 (38.19%), Postives = 118/199 (59.30%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFAIVLALR-QTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            +S    + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA +++   +T    I D   L   +P  A++ ++ + S  G+PPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  244 LSPAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSTEWHLLLEILAILSMILGNLIALTQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVSFGLRTGTDNIRDYAGLYTKDPFLALSSALCLLSLGGLPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVV 442          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C2_LEMMI (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Lemna minor GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 79/199 (39.70%), Postives = 118/199 (59.30%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            +SL   + W PD+YEGSPTPV AFLS+  K++ SA  +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T    I D   L   +P  A++ ++ + S  G+PPLAGF  K +LF+     G YFL  +G++TSV+
Sbjct:  244 LSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYIAMNLGTFARIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCGWQAGLYFLVSIGLLTSVV 442          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C2_LACSA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Lactuca sativa GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 78/193 (40.41%), Postives = 117/193 (60.62%), Query Frame = 1
Query:   52 YMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T  + I D   L   +P  A++ ++ + S  G+PPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  250 HQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVLFGLRTGTENIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCGWQAGLYFLVLIGLLTSVV 442          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C2_GUIAB (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Guizotia abyssinica GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 78/193 (40.41%), Postives = 117/193 (60.62%), Query Frame = 1
Query:   52 YMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T  + I D   L   +P  A++ ++ + S  G+PPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  250 HQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVLFGLRTGTENIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCGWQAGLYFLVLIGLLTSVV 442          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C1_LEMMI (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Lemna minor GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 79/199 (39.70%), Postives = 118/199 (59.30%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            +SL   + W PD+YEGSPTPV AFLS+  K++ SA  +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T    I D   L   +P  A++ ++ + S  G+PPLAGF  K +LF+     G YFL  +G++TSV+
Sbjct:  244 LSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYIAMNLGTFARIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCGWQAGLYFLVSIGLLTSVV 442          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C1_LACSA (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Lactuca sativa GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 78/193 (40.41%), Postives = 117/193 (60.62%), Query Frame = 1
Query:   52 YMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T  + I D   L   +P  A++ ++ + S  G+PPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  250 HQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVLFGLRTGTENIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCGWQAGLYFLVLIGLLTSVV 442          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C1_GUIAB (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Guizotia abyssinica GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 78/193 (40.41%), Postives = 117/193 (60.62%), Query Frame = 1
Query:   52 YMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T  + I D   L   +P  A++ ++ + S  G+PPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  250 HQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVLFGLRTGTENIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCGWQAGLYFLVLIGLLTSVV 442          
The following BLAST results are available for this feature:
BLAST of CX046848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU2C1_IPOPU1.403e-3340.93NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NUON1_ACIBL1.833e-3338.83NADH-quinone oxidoreductase subunit N 1 OS=Acidoba... [more]
NU2C_SYNP21.833e-3339.39NAD(P)H-quinone oxidoreductase subunit 2 OS=Synech... [more]
NU2C_COECR1.833e-3338.19NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C2_LEMMI1.833e-3339.70NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_LACSA1.833e-3340.41NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_GUIAB1.833e-3340.41NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_LEMMI1.833e-3339.70NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_LACSA1.833e-3340.41NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_GUIAB1.833e-3340.41NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10F04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F04-L7-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046848 ID=CX046848; Name=CX046848; organism=Citrus sinensis; type=EST; length=656bp
CCCCGAAGAAAACCCCCCTCCCTTTCGGGCTCCATATCTCTTTTGACTCT
ATATATGTGGGCACCTGATATCTATGAGGGTTCACCCACCCCGGTTACAG
CATTCCTTTCTATTGCGCCTAAAATATCTATTTCTGCTAATATTTCACGT
GTTTTTATTTATGGTTCCTATGGAGCTACATTGCAACAAATCTTCTTTTT
CTGCAGCATTGCTTCTATGATCTTAGGAGCACTGGCCGCCATGGCCCAAA
CGAAAGTAAAAAGACTTCTAGCTCATAGTTCAATTGGACATGTAGGTTAT
ATTCGTACTGGTTTCTCATGTGGAACCATAGAAGGAATTCAATCACTACT
AATTGGTATCTTTATTTATGCATTAATGACGATAGATGCATTCGCCATAG
TTTTAGCATTACGGCAAACCCGTGTCAAATATATAGCGGATTTGGGCGCT
CTAGCCAAAACGAATCCTATTTCGGCTATTACCTTCTCCATTACTATGTT
CTCATACGCGGGAATACCCCCGTTAGCCGGCTTTTGTAGCAAATTCTATT
TGTTCTTCGCCGCTTTGGGTTGTGGGGCTTACTTCCTAGCCCCAGTGGGA
GTAGTGACTAGCGTTATAGGTCGTTGGGCGGCCGGAAGGTTGCCACGAGT
AAGCCT
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